Pairwise Alignments

Query, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens FW300-N2E2

Subject, 870 a.a., DNA mismatch repair protein MutS from Cellulophaga baltica 18

 Score =  541 bits (1393), Expect = e-158
 Identities = 316/858 (36%), Positives = 505/858 (58%), Gaps = 19/858 (2%)

Query: 12  TPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGMAIPMCG 71
           TP+M QY  +K ++PD L+ +R+GDFYE F +DA KA+++L ITLT R  + G    + G
Sbjct: 10  TPLMNQYNTIKKKYPDALLLFRVGDFYETFGDDAIKASQILGITLTHRN-NGGEKTELAG 68

Query: 72  IPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEALLDERRD 131
            P+H+   YL KLVK G  V IC+Q+ DP  +K  V+R V  ++TPG   ++ +L+ + +
Sbjct: 69  FPHHSVNTYLPKLVKAGHRVAICDQLEDPKQTKTIVKRGVTELVTPGVAFNDDILNAKSN 128

Query: 132 NLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAEL-ERVNPVELLIPDDWPKDL- 189
           N +AA+    +  G+A LDI++G F  L  +G E+ + +L +   P E+L+     K+  
Sbjct: 129 NFLAAIHFGRKGIGVAFLDISTGEF--LTSEGTEDQVDKLLQNFAPNEILVSKSHKKEFI 186

Query: 190 -PAEKRRGVRRRAPWDFERDSALKSLCQQFSTQDLKGFGCENLTLAIGAAGCLLAYAKET 248
               K+        W F+ D AL++L   F T+ LKGFG ++L L I AAG  L Y  ET
Sbjct: 187 DTFGKQFHTFFMEDWVFQDDYALETLTNHFKTKSLKGFGVDHLNLGITAAGVALHYLTET 246

Query: 249 QRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRLL 308
           Q   L H+  L     ++ + +D  + RNLEL  +       TL  ++D+  + MG R+L
Sbjct: 247 QHRQLQHISKLERIAEEEYIWMDRFTIRNLEL-YHANNSNAITLLDIIDKTISPMGGRML 305

Query: 309 TRWLNRPLRDLTVLLARQSSITCLLDRYRFE-QLQPQLKEIGDIERILARIGLRNARPRD 367
            RWL  PL+++  +  R   ++ L        +LQ  +K+IGD+ER+++++      P++
Sbjct: 306 KRWLALPLKNIEKIKRRHEVVSYLKSNETIHTKLQNHIKQIGDLERLISKVATGKINPKE 365

Query: 368 LARLRDALGALPELQVAMTGLEAPHLQQLARTTSTYPELAALLEKAIIDNPPAVIRDGGV 427
           + +L+++L A+  ++      +   ++ +         L + +++ I +  P  +  G  
Sbjct: 366 VIQLKNSLEAIVPIKQLCVQSKNEAVKFIGDQLHACDLLRSKIKEMIHEEAPVNMLKGIT 425

Query: 428 LKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRIHGYFIELPSKQAEQ 487
           +  GY  ELDEL+ L+ +   +L  +  RE  RTG+++LK+  N + GY+IE+ +   ++
Sbjct: 426 IAKGYSEELDELRGLAFSGKDYLNKMLERETERTGISSLKIASNNVFGYYIEVRNTHKDK 485

Query: 488 APADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLISQLPPLQD 547
            P +++R+QTL  AER+IT ELK +E K L A+ R L  E+ L+  L+  +   + P+Q+
Sbjct: 486 VPEEWIRKQTLVNAERYITEELKEYEGKILGAEERILTLEQELFAQLIMWMQEYISPVQN 545

Query: 548 TAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRHPVVEQVLTTP--FVANDLS 605
            A  +A+LD L    + A   +   P       + I  GRHPV+E+ L     ++AND+ 
Sbjct: 546 NAFQIAQLDCLCGFTQLAKENNYTLPIINDTTEIEIINGRHPVIEKQLPLGEIYIANDVI 605

Query: 606 LD-DNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSD 664
           L+ D  ++++ITGPNM GKS  +RQTALIVLLA +GSFVPA   ++  VD+IFTR+G+SD
Sbjct: 606 LNRDEQQIIMITGPNMSGKSAILRQTALIVLLAQMGSFVPAEQAKIGFVDKIFTRVGASD 665

Query: 665 DLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLAH--LR 722
           +++ G STFMVEM+ETA+IL+N +ERSLVL+DE+GRGTST+DG+S+AWA +E L     R
Sbjct: 666 NISMGESTFMVEMNETASILNNLSERSLVLLDEIGRGTSTYDGISIAWAISEYLHEHPAR 725

Query: 723 AYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAG 782
           A TLFATHY E+  +  +   + N +++  E  + ++FL  + PG +  S+G+ VA++AG
Sbjct: 726 AKTLFATHYHEINEMATTFERIKNYNVSVKELKDNVLFLRKLTPGGSEHSFGIHVAKMAG 785

Query: 783 VPSEVITRAREHLSRLETTSLPHEAPRPTKGKPTAPQQSDLFASLPHPVL----DELAKL 838
           +P +VIT+A + L +LE +    E     K      Q S  F +L  P+L    +E+  L
Sbjct: 786 MPQQVITKANKILKKLEKSHSSEELTGKLKDAQEEMQLS--FFNLDDPLLQQVKEEITHL 843

Query: 839 DLDDLTPRRALDLLYTLK 856
           D++ LTP  AL  L  +K
Sbjct: 844 DINTLTPVEALMKLNEIK 861