Pairwise Alignments

Query, 173 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 71.2 bits (173), Expect = 9e-18
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 15  TPLLRTLERMVSNPSTAEDLLQETYLRVTRALAERTVEHLEPFVFQTARNLALDHLRARR 74
           T +L  L +   N S A D+ Q+ + +         VE    F+FQ ARNL  DH R ++
Sbjct: 19  TDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRKQK 78

Query: 75  IQSRTLLDDVPPEVVHNVVAPQSSAEDAAHAQQLLERLNVSLQALSSRQQQIFILSRLHG 134
           ++  T+  D            Q+    A    Q LE+L   L  LS R+++  +L R  G
Sbjct: 79  VR-HTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLHRFEG 137

Query: 135 HSYQQIAERLGVSLSTVQKELKLIMAIC 162
            S  QIAER+G+S S V+K +   +  C
Sbjct: 138 LSQAQIAERMGISTSMVEKHIAFALLHC 165