Pairwise Alignments

Query, 173 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 69.7 bits (169), Expect = 2e-17
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 10/149 (6%)

Query: 17  LLRTLERMVSNPSTAEDLLQETYLRVTRALAERTVEHLEPFVFQTARNLALDHLRARRIQ 76
           L+  L   + +   AED+  + YLRV        +EH   F+++TA NL +D  R + ++
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 77  SRTLLDDVPPEVVHNVVAPQSSAEDAAHAQQLLERLNV---SLQALSSRQQQIFILSRLH 133
               LD +  +        +  + +  H  QL +RL +   +L  LS   +  F+L ++ 
Sbjct: 68  QAEPLDALDAD-------SRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIE 120

Query: 134 GHSYQQIAERLGVSLSTVQKELKLIMAIC 162
           G S+QQIAERLG+S S V+K +   M  C
Sbjct: 121 GLSHQQIAERLGISRSLVEKHIVNAMKHC 149