Pairwise Alignments

Query, 173 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score =  251 bits (640), Expect = 6e-72
 Identities = 128/168 (76%), Positives = 149/168 (88%)

Query: 1   VSQSRFHHVFLAQRTPLLRTLERMVSNPSTAEDLLQETYLRVTRALAERTVEHLEPFVFQ 60
           +SQSRF+ VFL QR  LLRTL+RMV NPSTAEDLLQETYLRV+RAL ER +EH+EPFVFQ
Sbjct: 1   MSQSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQ 60

Query: 61  TARNLALDHLRARRIQSRTLLDDVPPEVVHNVVAPQSSAEDAAHAQQLLERLNVSLQALS 120
           TARNLALDHLRARR+Q+R L+DDVP EV+H+V AP +S+EDAAHA+QLL+ L+VSL  LS
Sbjct: 61  TARNLALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLS 120

Query: 121 SRQQQIFILSRLHGHSYQQIAERLGVSLSTVQKELKLIMAICVGVAER 168
            RQQ+IFILSRLHG +Y +IAE+L VS STVQKELKLIMAIC+GVAER
Sbjct: 121 ERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAER 168