Pairwise Alignments

Query, 120 a.a., Helix-turn-helix motif from Pseudomonas fluorescens FW300-N2E2

Subject, 138 a.a., predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

 Score = 41.6 bits (96), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 7   IRNQDDLNAAFARIEQLWGADVGSAEGDELEILALLIEKYED------EHYPMPPSDP-- 58
           I+N++    A   ++ L    +   E   L+++   I  +E+      E   M  + P  
Sbjct: 24  IQNEEQYTQALELVDHLL---LNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG 80

Query: 59  IEAIKFRMDQQGLTARDLEPFLGSSGRVSEVLNRKRKLSLAMIKRL 104
           I  I+  MDQ GLT  DL P +GS   VS VL+ KRKL+L   K+L
Sbjct: 81  IAVIRTLMDQYGLTLSDL-PEIGSKSMVSRVLSGKRKLTLEHAKKL 125