Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  275 bits (702), Expect = 5e-78
 Identities = 157/343 (45%), Positives = 220/343 (64%), Gaps = 25/343 (7%)

Query: 146 LVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNCGA 205
           ++  S+A++ + Q +  VA +D++VLI GE+GTGKEV+AR +H  S RR+ P V +NC A
Sbjct: 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406

Query: 206 IPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQER 265
           IPA LLESELFGH+KGAFTGAI +  GRFE+A+GGTLFLDEIGD+PL +Q KLLRVLQER
Sbjct: 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466

Query: 266 TFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDLYYRLNVFPIEMAPLRERVEDIP 325
             ER+G ++T  V+VR+IAAT+++L  M+E   FR DL+YRLNVFP+E+ PLR+R EDIP
Sbjct: 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526

Query: 326 LLMNELISRM-EHEKRGSIRFNSAAIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGVN 384
           LL      +M  H  R      + A+  L    WPGNVREL N++ER  ++     + ++
Sbjct: 527 LLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH 586

Query: 385 ELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPDFTANALLPPEGLDLKDYLGGLEQG 444
              ++ R +   +E    +LRS + +   ++  TP+                     E+ 
Sbjct: 587 LNVRQSRLLPTLNED--SALRSSMAQ--LLHPTTPENDEE-----------------ERQ 625

Query: 445 LIQQALDDANGIVA---RAAERLRIRRTTLVEKMRKYGMSRRE 484
            I Q L + NGIVA    AA RL ++RTTL+ +M++ G+S RE
Sbjct: 626 RIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVRE 668