Pairwise Alignments

Query, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas fluorescens FW300-N2E2

Subject, 334 a.a., Flagellar motor switch protein FliM from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  258 bits (660), Expect = 1e-73
 Identities = 125/311 (40%), Positives = 199/311 (63%), Gaps = 2/311 (0%)

Query: 7   LSQDEIDALLHGVDDGLVQTENAAEP-GSVKSYDLTSQDRIVRGRMPTLEMINERFARYT 65
           LSQ+EIDALL GV     +      P G V+ Y L+SQ+RIVRGRMPT+E++NERF+R  
Sbjct: 6   LSQEEIDALLEGVTGESQKLAKEEVPTGGVRDYSLSSQERIVRGRMPTMEIVNERFSRNL 65

Query: 66  RISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFK 125
           R+ +FN +RRS +++VG VQV K+  ++  L VPT+ N++ I+PLRG  L + +  L+F 
Sbjct: 66  RLGLFNFIRRSPEISVGAVQVQKYSAFLRELVVPTNFNIMAIRPLRGNGLVVCEPTLLFG 125

Query: 126 LVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEYINSEVN 184
           ++D+ FGG+G+ H +IEGR+F+PTE RV+  ++E    + K+AW+ +  +   Y  SE+ 
Sbjct: 126 VIDSLFGGNGKFHTRIEGRDFSPTEQRVINRLVEVVSEEYKKAWRGVYPIELAYQRSEMQ 185

Query: 185 PAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERW 244
           P  A I  PSE +V ++F +E+    G LH+ +PY+ +EP+R++L +  Q D  + D RW
Sbjct: 186 PQFATIATPSEIVVSTSFTLEIGDITGSLHICIPYATLEPIRDVLYSSVQGDAIEVDRRW 245

Query: 245 INALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPEDMIMRANGVPAFKVKM 304
           +  L  ++   +V + A +A+ +  +  +L MQ GD I ++    +    +GVP F+ + 
Sbjct: 246 VKLLSHEIQAAEVTMVAELAQTEATVEQLLAMQIGDFIELDRHPSIKAHVDGVPVFECQY 305

Query: 305 GSHKGNLALQV 315
           G+HKG  AL+V
Sbjct: 306 GTHKGKYALRV 316