Pairwise Alignments

Query, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas fluorescens FW300-N2E2

Subject, 334 a.a., flagellar motor switch protein M (NCBI) from Escherichia coli BW25113

 Score =  244 bits (622), Expect = 3e-69
 Identities = 133/322 (41%), Positives = 198/322 (61%), Gaps = 10/322 (3%)

Query: 6   LLSQDEIDALLHGVDDGLVQTENAAE---PGSVKSYDLTSQDRIVRGRMPTLEMINERFA 62
           +LSQ EIDALL+G  D  V+ E  A       ++ YD  +Q R+VR R+  LE+INERFA
Sbjct: 5   ILSQAEIDALLNG--DSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62

Query: 63  RYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKL 122
           R+ R+ +FN+LRRS D+ VG +++  + E+  +L VPT+LNL+ +KPLRGT L +    L
Sbjct: 63  RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122

Query: 123 VFKLVDNFFGGDGRH-AKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEYINS 181
           VF  VDN FGGDGR   K+EGREFT TE RV+  +L+ A     +AW+AI  +  EY+ S
Sbjct: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182

Query: 182 EVNPAMANI-VGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQ 240
           E+     NI   P++ +V + FH+E+    G+ ++ +P+SMIEP+RE+L      +  ++
Sbjct: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNE 242

Query: 241 DERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPEDMIMRANGVPAF 300
           D+ W + L + V    + + A  A   LRL  IL + PGD++P+E P+ +I   +GVP  
Sbjct: 243 DQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVL 302

Query: 301 KVKMGSHKGNLALQV---IEPI 319
             + G+  G  AL++   I PI
Sbjct: 303 TSQYGTLNGQYALRIEHLINPI 324