Pairwise Alignments

Query, 347 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

Subject, 367 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  217 bits (553), Expect = 3e-61
 Identities = 129/331 (38%), Positives = 187/331 (56%), Gaps = 9/331 (2%)

Query: 20  GSAPASQVPIRVAFVLMDNFSMMSFTGAVDALVTANLMSDMPLYEVLTVGVSGGQVTSDL 79
           G+ P ++ P  + F+L+DNF+++S   AV+ L  AN +S   LY   T+ V GGQV +  
Sbjct: 7   GAQPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLTVDGGQVWASD 66

Query: 80  GIVISTDIELAQMPENQDVLIVAGGFRVKLQGHPLLRRKLRANAASGTILGGLWNGVFFV 139
           G+ I+ D  + + P   D +IV GG  ++          L++ A     LG +  G + +
Sbjct: 67  GLQITPDASMHKAPA-LDTVIVCGGIGIQRTVTREHVSWLQSQARQSRRLGAVCTGSWAL 125

Query: 140 ADANLLDGFECAVHPESRAMMAEVFPHVKVSSRAYVVDRERVSCAGANSSLRMMLQLIRQ 199
           A A LLDGF+C+VH E  A M E FP V +S+R + +DR R + +G  + L MML LI +
Sbjct: 126 ACAGLLDGFDCSVHWECLAAMQEAFPRVSMSTRLFTLDRNRFTSSGGTAPLDMMLHLISR 185

Query: 200 TGGAALVGAIEEILRCD----ESGDDATDLPPVFVETDPTLPESLKLALELMWQNVEEPL 255
             G  L  AI E+   +    E       L  +     P L E     + LM  N+EEP+
Sbjct: 186 DHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQE----IVALMEANLEEPI 241

Query: 256 TIDELAACVKISKRQLERRFCSFLGATPTRYYLELRLTRARQLIQQTNRSVTEIAVATGF 315
            +DELA  V +S+RQLER F  +L  +P+RYYL+LRL RARQL++QT  S+ E+A   GF
Sbjct: 242 DLDELAVYVAVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCGF 301

Query: 316 VSSPHFQRRFRDFFGVPPGSYRSKSERKQTV 346
           VS+PHF + +R++FG+PP   R  S   Q V
Sbjct: 302 VSTPHFSKCYREYFGIPPRDERVGSNTTQQV 332