Pairwise Alignments

Query, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 259 a.a., Flagellar biosynthetic protein FliR from Alteromonas macleodii MIT1002

 Score = 62.0 bits (149), Expect = 1e-14
 Identities = 48/223 (21%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 14  AAALLGVARLAPIFFMLPFLNSGVLTGVARQAVIVLVALGFWAYVGVPTPALDSLAFLG- 72
           A  LL   R++ +F  +  L++  +    R  + +++ L     V  P   +++L  +G 
Sbjct: 13  ADMLLPFMRISGLFVAMIGLSAKSIPPQVRALLGIMLTLIIMPVV--PPSPIENLVDVGT 70

Query: 73  --LMLREVSIGVLLGVLLCWPFWVLHAMGNLIDNQRGAMLSSTVDPANGVDTSELANFLQ 130
             ++++++ IG+ +G +           G +I  Q G   +S VDP NG++   +  F  
Sbjct: 71  FLIVIQQLLIGIAIGFISMMVLNTFVLAGQIIAMQTGLGFASIVDPVNGINVPAVGQFYL 130

Query: 131 LFAAAVYLEGGGMLLMLETVAQSYRICAPANDC----AIHLSALHALLDVLVSKTLVISA 186
           + A  ++    G L M++ +  S+    P  +            H    + +S   +  A
Sbjct: 131 ILATLLFWTLDGHLSMIQMIVMSFE-AFPIGEAWWTGEQFRDIAHWAGWMFISAVTLSLA 189

Query: 187 PVVATLLVSEALLGLLSRYAPQMNAFSVSLTVKSLVALVVLML 229
           P+V+ L+V+ A  G++++ APQ+N FS+  ++  ++ L+++ +
Sbjct: 190 PIVSLLIVNLA-FGVMTKAAPQLNIFSIGFSIAQVMGLLIIWI 231