Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 352 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  125 bits (313), Expect = 2e-33
 Identities = 98/351 (27%), Positives = 170/351 (48%), Gaps = 17/351 (4%)

Query: 5   ASKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGISYLVFNSS-------LFEIMEVY 57
           + KTE+PT K+LRD  ++GQ  K+  + IT L      YL F+         L E +   
Sbjct: 2   SEKTEQPTEKKLRDGRKEGQVVKS--IEITSLFQLIALYLYFHFFTEKMILILIESITFT 59

Query: 58  RRIIASDFDVELQTYSAMLVLVGLKTLLPLLLVCVLTSALPALLQSGFALASEALKLNLG 117
            +++   F   L   S  L+      LL L    ++ +     LQ G  +AS+A+     
Sbjct: 60  LQLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 118 ALNPINGFKKLFSLRTV----KDTFKALLYLGSFAMALWIVWVTQRQLLFAQLFAQAADL 173
            +NP++ FK++FSL +V    K + K ++    FA   +    T R L +  L   A  +
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGL---ACGV 176

Query: 174 FAIWGHLLLVLVLAFLACILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQIKG 233
             +   L+  L +  +   +++ +LD   +Y    KD  M KD VK+EHK+ +G+PQ+K 
Sbjct: 177 LVV-SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKT 235

Query: 234 RRRDLHMELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRALAVR 293
           RRR++  E+ S  +   V+ S  ++ NPTHIA+ + + P    +P +    ++ +A  + 
Sbjct: 236 RRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIV 295

Query: 294 AYAKAVGVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWLEQVEQA 344
             A+   +PV+ +  LAR +F   +R   +     E V  LL  + +++ A
Sbjct: 296 NIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYA 346