Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 382 a.a., flagellar biosynthesis protein B (NCBI) from Escherichia coli BW25113

 Score =  108 bits (269), Expect = 3e-28
 Identities = 83/352 (23%), Positives = 157/352 (44%), Gaps = 17/352 (4%)

Query: 4   SASKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGISYLVFN--------SSLFEIME 55
           S  KTE PT  RL  A  +GQ  ++++L    + L G+S + F         S +     
Sbjct: 5   SDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGL 64

Query: 56  VYRRIIASDFDVELQTYSAMLVLVGLKTLLPLLLVCVLTSALPALLQSGFALASEALKLN 115
            +   I +D ++ L     +L+   +  LLPL+   VL + +  ++  G   + ++L+  
Sbjct: 65  HFDHSIINDPNLILGQI-ILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPK 123

Query: 116 LGALNPINGFKKLFSLRTVKDTFKALL---YLGSFA-MALWIVWVTQRQLLFAQLFAQAA 171
              LNP+ G K++FS +T  +  KA+L    +GS     LW  W    +L+         
Sbjct: 124 FSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMG 183

Query: 172 DLFAIWGHLLLVLVLAFLACILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQI 231
           +   + G   L++VL     ++ +V  D   +    +K   M +  ++ E K+ +G+P +
Sbjct: 184 NAMDLVGLCALLVVLG----VIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239

Query: 232 KGRRRDLHMELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRALA 291
           KGR R +       ++ +DV  + +I+ NPTH ++ + +       P +        AL 
Sbjct: 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALR 299

Query: 292 VRAYAKAVGVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWLEQVEQ 343
           +R       VP +    LAR +++  +    +  Q    V  +L W+ Q+++
Sbjct: 300 IREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKR 351