Pairwise Alignments

Query, 239 a.a., Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) from Pseudomonas fluorescens FW300-N2E2

Subject, 252 a.a., Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  242 bits (617), Expect = 6e-69
 Identities = 122/222 (54%), Positives = 165/222 (74%), Gaps = 2/222 (0%)

Query: 9   LLGLALAGCRQPSLLEGLDQQQANEVLSVLQRNNIAAVKVDAGKAGYAVKIDQSDFSAAV 68
           LL + LAGC+   LL+GLDQ+QANEV++VLQ +NI A K+D+GK GY++ + + DF+AAV
Sbjct: 10  LLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAV 69

Query: 69  DLLNLYSLPSRPRLQVAEMFPADSLVASPRAEKARLYSALEQRIEQSLAVLEGVVSARVH 128
             +  Y LP RPR+++A+MFPADSLV+SPRAEKARLYSA+EQR+EQSL  +EGV+SARVH
Sbjct: 70  YWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVH 129

Query: 129 VSYDLDAGEGGRKSPPIHLSAVVLHERDVEPQLLITDIKRFLKNSFAAVEYENVSVVLSK 188
           +SYD+DAGE GR   P+HLSA+ ++ER       I+DIKRFLKNSFA V+Y+N+SVVLS+
Sbjct: 130 ISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVVLSE 189

Query: 189 RAPIQHVAPTVTASQGHSGWPWWLALIGGLLLAA--GAWVYR 228
           R+  Q  AP     +      W + +I   +++A  G W Y+
Sbjct: 190 RSDAQLQAPGTPVKRNSFATSWIVLIILLSVMSAGFGVWYYK 231