Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 671 a.a., DNA ligase, NAD(+)-dependent from Escherichia coli BL21

 Score =  650 bits (1678), Expect = 0.0
 Identities = 336/624 (53%), Positives = 432/624 (69%), Gaps = 26/624 (4%)

Query: 1   MTAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQ 60
           M ++E ++ +LRT L  H Y YHV+D P IPDAEYDRL  EL+ LE +HPEL+T DSPTQ
Sbjct: 1   MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ 60

Query: 61  RVGSMALSAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSC 120
           RVG+  L+AFSQ+RHE+PMLSL N FDE +   F++RV         D L     V + C
Sbjct: 61  RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQ--------DRLKSNEKVTWCC 112

Query: 121 EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRG 180
           E KLDGLAVS+LY++G+LV  ATRGDGTTGEDI+ NVRT+R IPLKL G   P  LEVRG
Sbjct: 113 ELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRG 172

Query: 181 EVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTT 240
           EV++ +AGFE++N      GGK FANPRNAAAGSLRQLD +ITA RPL F CYG+G +  
Sbjct: 173 EVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEG 232

Query: 241 -DIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVN 299
            ++ DTH+G L Q K WGLP+S  + L    +E L +Y  + E R  L ++IDGVV KVN
Sbjct: 233 GELPDTHLGRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVN 292

Query: 300 SIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVT 359
           S+A Q +LGF AR PRWA+A KFPA E++T + DVEFQVGRTGA+TPVARL+PV VAGV 
Sbjct: 293 SLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVL 352

Query: 360 VANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAIPQQCPVCG 419
           V+NATLHN DE+ RLGL IGD V+IRRAGDVIPQVV V+   RPE  R V  P  CPVCG
Sbjct: 353 VSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCG 412

Query: 420 SHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVE 479
           S VER            +   AV RC G L CGAQ K+++ HFVSRRAMD++G+G+K ++
Sbjct: 413 SDVER------------VEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIID 460

Query: 480 QLVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDV 539
           QLV++  V +PADL+ LT  ++  LE     S++N++ A+  +K+ + ARF+YALGI +V
Sbjct: 461 QLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREV 520

Query: 540 GEETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHG 599
           GE TA  LA   G+LE ++AA  + L  +PDVG+ VA  +H+FF +  NR VI +LL  G
Sbjct: 521 GEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEG 580

Query: 600 LE-----IQDQGELGAEFSASTTL 618
           +      + +  E+ + F+  T +
Sbjct: 581 VHWPAPIVINAEEIDSPFAGKTVV 604



 Score =  108 bits (269), Expect = 1e-27
 Identities = 79/174 (45%), Positives = 98/174 (56%), Gaps = 11/174 (6%)

Query: 611 EFSASTTLGGFLDKLDIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQALPEKQ---ANA 667
           E +  TT   FL  L I  VG   A  LA  FG+LEA+  A  ++  Q +P+     A+ 
Sbjct: 501 EKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAAS-IEELQKVPDVGIVVASH 559

Query: 668 VREFFANASNRQQAEAAERQLRDFGMHWQSEKKV-VEGL--PEAGHTWVLTGSLELMSRD 724
           V  FFA  SNR        +L   G+HW +   +  E +  P AG T VLTGSL  MSRD
Sbjct: 560 VHNFFAEESNRNVIS----ELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRD 615

Query: 725 VAKDKLESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFL 778
            AK +L  LGAKVAGSVS KT  V+AG  AGSKL KA ELG++V+DE   +  L
Sbjct: 616 DAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669