Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 724 a.a., DNA ligase from Agrobacterium fabrum C58

 Score =  459 bits (1182), Expect = e-133
 Identities = 278/695 (40%), Positives = 385/695 (55%), Gaps = 80/695 (11%)

Query: 11  LRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRVGSMALSAF 70
           L  EL +H+  YH  D P I DA+YD L     A+E   P LV +DSP+++VG   L  F
Sbjct: 23  LAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRADSPSKKVGFTPLPTF 82

Query: 71  SQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEPKLDGLAVS 130
           + + H  PMLSL N F E  +R+F   V   L     D      ++ ++ EPK+DGL++S
Sbjct: 83  APIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD------SIAFTAEPKIDGLSMS 136

Query: 131 LLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRGEVYMSKAGFE 190
           + Y++  L   ATRGDGTTGE+++ N+RT++ IP +L     P ++EVRGEVYM+K+ F 
Sbjct: 137 IRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPADA-PDVVEVRGEVYMAKSDFL 195

Query: 191 RLNATQLEAGGK-TFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTTD-----IAD 244
            LNA Q+EA GK T+ NPRN A+GSLRQLD+ +TA R L F  Y +G+V+       IAD
Sbjct: 196 ALNA-QMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYALGEVSNGGQPARIAD 254

Query: 245 THIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNSIASQ 304
           T  G +++ + WG P++  +K      + L++Y +IG  R  L Y+IDGVV+KV+ +  Q
Sbjct: 255 TQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYDIDGVVYKVDRLDLQ 314

Query: 305 RELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANAT 364
             LGFR+R PRWA AHKFPA +  T + ++E QVGRTGA+TPVARL P+ V GV V NAT
Sbjct: 315 ERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARLTPITVGGVVVTNAT 374

Query: 365 LHNMDEVARLG------------LMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAIP 412
           LHN D +  +G            + IGDTVI++RAGDVIPQV+ V+ E+R   A     P
Sbjct: 375 LHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVLLEKRAAGAAKYVFP 434

Query: 413 QQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEG 472
           ++CPVCGSH        R +  +T    +V RC G   C AQ  + + HFVSR A DIEG
Sbjct: 435 EKCPVCGSHA------VRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFDIEG 488

Query: 473 LGEKSVEQLVDEG----LVGSPADLYALTFEQ-------VVDLEGFAELSSKNLLAAIVD 521
           LG K ++   +       + +  D++ L   Q       + +++GF ++S K L  AI  
Sbjct: 489 LGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVKKLFDAIDA 548

Query: 522 SKKPSLARFIYALGIPDVGEETAKVLARSLGSLERVQAALPQV----------LTYLPDV 571
            +   L R I+ALGI  VGE TAK+LARS G+ E  + A+             L  +  +
Sbjct: 549 RRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAELNSIDGI 608

Query: 572 GLEVAHEIHSFFEDPHNRQVIKDLLRH-------------------------GLE--IQD 604
           G  VA  I  F+++P N  VI  L+R                           LE   +D
Sbjct: 609 GEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTVVFTGSLEKFTRD 668

Query: 605 QGELGAEFSASTTLGGFLDKLDIPSVGPGGAQKLA 639
           + +  AE   +   G    K DI   GPG   KLA
Sbjct: 669 EAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLA 703



 Score =  103 bits (258), Expect = 3e-26
 Identities = 69/166 (41%), Positives = 92/166 (55%), Gaps = 16/166 (9%)

Query: 625 LDIPSVGPGGAQKLADKFGSLEAVMNA----------DWLDMRQ--ALPEKQANAVREFF 672
           L I  VG   A+ LA  +G+ E    A           W ++     + E  A A+ EF+
Sbjct: 561 LGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAELNSIDGIGEVVARAIIEFY 620

Query: 673 ANASNRQQAEAAERQLRDFGMHWQSEKKVVEGLPEAGHTWVLTGSLELMSRDVAKDKLES 732
               N    +   R+L+      ++EK   EG P AG T V TGSLE  +RD AK + ES
Sbjct: 621 KEPRNLDVIDRLIRELQPK----EAEKPSTEGSPVAGKTVVFTGSLEKFTRDEAKARAES 676

Query: 733 LGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFL 778
           LGAKVAGSVS KT  +VAGPGAGSKL KA ELG++ +DE+ ++A +
Sbjct: 677 LGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDEDEWLALI 722