Pairwise Alignments

Query, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

Subject, 457 a.a., multidrug efflux system transporter from Escherichia coli BL21

 Score =  389 bits (998), Expect = e-112
 Identities = 207/430 (48%), Positives = 280/430 (65%), Gaps = 1/430 (0%)

Query: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMTGTLLATTP 60
           LLALA+P+++AQ+A TAMGFVD VMAG     D+AAVA+G SIW+P  L   G LLA TP
Sbjct: 11  LLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTP 70

Query: 61  KVAQRFGAGTFAEIGPLVRQALWLALVVGLIASLALFSAEPILHIM-NVDPELIGPCMEY 119
            +AQ  G+G    I   VRQ  WLA  V ++  L L++A  I+  M N+DP L    + Y
Sbjct: 71  VIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALAEKAVGY 130

Query: 120 LRGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHLGVPAMGG 179
           LR +  G P    + V R   +GL +T+P MV+G  GL +NIP+NYIFIYGH G+P +GG
Sbjct: 131 LRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGG 190

Query: 180 VGCGWATAIVMWVMALGMAGWARWAPAYQSSRLFSRFDWPQWAVIKRLLGIGLPIGIAVF 239
           VGCG ATA V WVM L M  + + A + +  R       P  AV+KRL+ +GLPI +A+F
Sbjct: 191 VGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALF 250

Query: 240 AESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQALGRAQPRE 299
            E ++FAV+ALL+  LG   VAGHQIALNFSSL+F++P SL  AVT+RVG  LG+    +
Sbjct: 251 FEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLD 310

Query: 300 ARFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPVVIEVASMLIVYAALFQFSDAI 359
           A+ AA  G+   +  A L+A    +LR  IA +Y  +P V+ +A+ L++ AA++Q SD+I
Sbjct: 311 AQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSI 370

Query: 360 QVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWLGAASGPSGLWQGLIVGLS 419
           QV  +G LRGY+DTR    +T  AYW +GLP GY L LTD +    GP+G W G I+GL+
Sbjct: 371 QVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLT 430

Query: 420 CAALMLSIRL 429
            AA+M+ +R+
Sbjct: 431 SAAIMMMLRM 440