Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1148 a.a., transcription-repair coupling factor (NCBI) from Escherichia coli BW25113

 Score = 1250 bits (3234), Expect = 0.0
 Identities = 641/1138 (56%), Positives = 833/1138 (73%), Gaps = 6/1138 (0%)

Query: 9    LPAAAGKQHW-GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV 67
            LP  AG+Q   G L GAA +  +AE A       +L+  D Q+A RL  E+S F  D  V
Sbjct: 9    LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMV 67

Query: 68   LHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQFLLGSS 127
            ++  DWETLPYD FSPHQDIIS R+++LY+LP +  GVL+VP+ T + R+ P  FL G +
Sbjct: 68   MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127

Query: 128  LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDD 187
            LV+  GQ+L  + +RT+L+++GYR VD V EHGE+A RGAL+DLFPMGS+LPYR+D FDD
Sbjct: 128  LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187

Query: 188  EIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFRRCPIFQD 247
            EI++LR FD ++QR++++V++I LLPA EFP  K A+  F++++R+ F+V      I+Q 
Sbjct: 188  EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247

Query: 248  LSSGITPAGIEYYLPLFFEET-STLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERR 306
            +S G  PAGIEY+ PLFF E    LF Y P +T + +   +E +AE F  D   R+E R 
Sbjct: 248  VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307

Query: 307  VDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARALPDLAIEAKA 366
            VDP RPLLPP  L+L V++ F+ LK+WPRV    + + T         + LPDLA++A+ 
Sbjct: 308  VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367

Query: 367  TQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAGKDRLAI 426
              PL AL  FL+ F G V+F+ ES GRRE L ELL R+K+ P+ +    D  + + R  +
Sbjct: 368  KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-DEASDRGRY-L 425

Query: 427  TIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELREGAPVV 486
             I     G V     LAL+ ES L G+RV  RRR++ R     D +I+NL EL  G PVV
Sbjct: 426  MIGAAEHGFVDTVRNLALICESDLLGERVA-RRRQDSRRTINPDTLIRNLAELHIGQPVV 484

Query: 487  HIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHR 546
            H++HGVGRY G+ TLE      E+L L YA  AKLYVPV++LHLI+RY G  +  APLH+
Sbjct: 485  HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544

Query: 547  LGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFPFEETVD 606
            LG + W +A++KAAE+VRDVAAELLDIYA+RAA+EG+AF   +  Y+ F   FPFE T D
Sbjct: 545  LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604

Query: 607  QQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQ 666
            Q   I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV   KQVA+LVPTTLLAQQ
Sbjct: 605  QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664

Query: 667  HYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKFKSLG 726
            HY++FRDRFA+WPV +E++SRF+S KE    +A++AEGKIDI+IGTHKLLQ DVKFK LG
Sbjct: 665  HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724

Query: 727  LVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRL 786
            L+I+DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNMA+SGMRDLSIIATPPARRL
Sbjct: 725  LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784

Query: 787  SVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQ 846
            +V+TFV E +   V+EA+LRE+LRGGQVYYL+NDV+ I+K A  LAELVPEARI IGHGQ
Sbjct: 785  AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844

Query: 847  MRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG 906
            MRERELE+VM+DF+H+RFNVL+ +TIIETGID+P+ANTIIIERAD FGLAQLHQLRGRVG
Sbjct: 845  MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904

Query: 907  RSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQS 966
            RSHHQAYA+LLTP  + +T DA+KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLG+ QS
Sbjct: 905  RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964

Query: 967  GQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVHARL 1026
            G ++ +GF+LYME+LE AV +++ G +P+L+       E+ LR+P+L+P+D++PDV+ RL
Sbjct: 965  GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024

Query: 1027 ILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKVDGGPNG 1086
              YKRIASA  E  L++++VE+IDRFGLLP+P + L+    L+ +A++LGI+K++G   G
Sbjct: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084

Query: 1087 GRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTVEALFERL 1144
            G IEF  +  V+P  LI L+Q QP+ Y+ +G T  KF+  +   + R   V      L
Sbjct: 1085 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142