Pairwise Alignments

Query, 312 a.a., tRNA dihydrouridine synthase A from Pseudomonas fluorescens FW300-N2E2

Subject, 331 a.a., TIM-barrel protein, nifR3 family from Bacteroides ovatus ATCC 8483

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 20/295 (6%)

Query: 1   MMDWTDAHCRFFLRILSKHALLYTEMVTTGALLNGDHE--RFLRHHPSEHPLALQLGGSV 58
           M D TD   R   +      ++YTE V++ AL+    +  + L    +E P+A+Q+ G  
Sbjct: 18  MEDVTDPAFRLMCKKFGAD-MVYTEFVSSDALIRAVSKTAQKLSISDAERPVAIQIYGKD 76

Query: 59  PADLAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRDAVSIP 118
              +   A++ ++   D +++N GCP  RV     GA ++ +   + +  +A+ DAV IP
Sbjct: 77  TETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136

Query: 119 VTVKHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDV 178
           VTVK R+G +  +  + + E    +++ G  + T+H R          +   I  ++ + 
Sbjct: 137 VTVKTRLGWDANN--KVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEVKNNP 194

Query: 179 AARLKADFPELEIVLNGGIKTLEACHEHLQTF--DGVMLGREAYHNPYLLAEVDQQL-FG 235
                     + I+ NG + + + C E    +  D VM+GR ++  P++  E+   L  G
Sbjct: 195 RM-------HIPIIGNGDVTSPQRCKECFDRYGVDAVMIGRASFGRPWIFKEIKHYLETG 247

Query: 236 STAPIISRAEALAQLRPYIADH---LAAGGAMHHITRHVLG--LGTGFPGARRFR 285
              P +S    +  LR  + D    L     + H+ RH+    L  G P  R  R
Sbjct: 248 EELPPLSFEWCMEVLRQEVVDSVNLLDERRGILHVRRHLAASPLFKGIPNFRNTR 302