Pairwise Alignments

Query, 258 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

Subject, 294 a.a., AraC-type DNA-binding domain and AraC-containing proteins from Erwinia amylovora T8

 Score =  166 bits (421), Expect = 4e-46
 Identities = 99/256 (38%), Positives = 144/256 (56%), Gaps = 10/256 (3%)

Query: 1   MIEPSIVLVAQGEKQVWIGGEAYGYDTGRFLMTSLDIPANSEVLQASPEQPCLGLVLRLD 60
           M +P+IV+V QGEK  ++G   + YD  ++LM +L +P   E   A+ E+P  GL LR+D
Sbjct: 44  MYKPAIVIVLQGEKTGYLGQSVFHYDASKYLMLTLPLPFECETF-ATAERPLAGLSLRVD 102

Query: 61  LRMVADLIAQ-----GSLPPPRDRAVGIGAGIGTATPDLLAPFARLLGLLDEPDAIPILA 115
              + DL+       G  P P +     G      T ++L    RLL  +  P    +L 
Sbjct: 103 ALQLQDLLIDIGEDDGFHPQPLNH----GIHSAQLTEEMLCATERLLDAMAHPRDARVLG 158

Query: 116 PLIQREIHYRLLLSDQAARLRQIVSVDSQGYRIAKAIDWLKLNYTEPVRVDDLAARVQMS 175
           P I REI Y  L       L  +VS  +Q  +IA+A+  ++ ++T+ + VD LAA   MS
Sbjct: 159 PNIVREILYHALQGPCGGALLALVSRQTQFSQIARALRRIEHHFTDSLSVDQLAAEANMS 218

Query: 176 APTFHHHFRQLTAMSPLQYQKWLRLNEAKRLMLNEHVDVASAAFKVGYESPSQFSREYAR 235
              FHH+F+ +T+ SPLQY K  RL++A+ +M+ E +  + AA KVGYESPSQFSRE+ R
Sbjct: 219 VSAFHHNFKAVTSTSPLQYIKSYRLHQARLMMMQEGMKASVAALKVGYESPSQFSREFKR 278

Query: 236 LFGVPPKRDIAALRGP 251
            FGV P  ++  LR P
Sbjct: 279 YFGVTPGEEMTRLRHP 294