Pairwise Alignments

Query, 325 a.a., Murein-DD-endopeptidase (EC 3.4.99.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 400 a.a., D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) from Escherichia coli BW25113

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 21/276 (7%)

Query: 26  AFTGSFITQNVAAQETIAAPRDTAKLQVASGSAMLLDLQTDKVVYSSNPDVVVPIASVTK 85
           AF   F     AA++T+ AP   A+  +      L+D  + KV+   N D  +  AS+TK
Sbjct: 16  AFLFLFAPTAFAAEQTVEAPSVDARAWI------LMDYASGKVLAEGNADEKLDPASLTK 69

Query: 86  LMTGLIVLDA----KQNLDEYISIT----IANTPEMKGVFSR-VKLNSELSRRDVLLIAL 136
           +MT  +V  A    K  L + +++         P ++G     +K   ++S  D+    +
Sbjct: 70  IMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVI 129

Query: 137 MSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSI-HNVSTARDLTK 195
           + S N A  +LA +  G   +FI  MN  AK LG+T+T +    GL      STARD+  
Sbjct: 130 IQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA- 188

Query: 196 LLIAARKYPLLSELSTTKEKTVTFRKPVYSLGFRNTDHLVHKANWDIQLTKTGFTNQAGH 255
           LL  A  + +  E +  KEK  TF K    +   N + L+  +N ++   KTG T  AG+
Sbjct: 189 LLGKALIHDVPEEYAIHKEKEFTFNK----IRQPNRNRLLWSSNLNVDGMKTGTTAGAGY 244

Query: 256 CLVLVTKMGNRPMALVILDAFGKYTHFADASRIRSW 291
            LV     G+  +  V+L A      F ++ ++ +W
Sbjct: 245 NLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTW 280