Pairwise Alignments

Query, 397 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

Subject, 394 a.a., efflux RND transporter periplasmic adaptor subunit from Erwinia tracheiphila SCR3

 Score =  318 bits (815), Expect = 2e-91
 Identities = 173/378 (45%), Positives = 255/378 (67%), Gaps = 5/378 (1%)

Query: 8   KSLVTAAILVCLIVLFMLGGCSGES---APTPEPPKVSVITVQPQSQALTTELAGRTQAF 64
           + L+  A ++ L    +L GC  +S   A   + P+V V+T++     +TT+L GRT +F
Sbjct: 5   RGLIPLAAVLILSGSMLLTGCDNKSTQQAGQQQAPEVGVVTLKTAPLTVTTDLPGRTSSF 64

Query: 65  MVAEIRPQVGGIVQQRLFVEGAEVKAGQALYQLDASSYKAALAEAQANLAKARATLKSAQ 124
            +AE+RPQV GI+ +R FVEG+++KAG++LYQ++ ++Y+AA   A+ +LA+A+A  + A 
Sbjct: 65  RIAEVRPQVSGIILKRNFVEGSDIKAGESLYQIEPATYQAAYDSAKGDLAQAQANAEIAA 124

Query: 125 ATAKRDAQLVKIDAISQQDNEDAQANLMTAEAEVQVAQADVDTARINLAYTRISSPVSGR 184
            T KR   L+    ISQQD + A A      A V+VA+A V+TARINL +T+++SP++GR
Sbjct: 125 LTVKRYKPLLGTKYISQQDYDTAVATASQTAAAVEVAKASVETARINLTFTKVTSPINGR 184

Query: 185 VETSTVTPGALVVANQDSALTTVQQLDPMYVDVTQSTTELLRLKRDLASGVLQSNGEGEA 244
           +  S+VT GALV   Q +AL TVQQLDP+YVDVTQS+ +  RL+ +L SG LQ  G G+A
Sbjct: 185 IGRSSVTEGALVQNAQTTALATVQQLDPIYVDVTQSSEDYTRLRAELRSGKLQQTG-GKA 243

Query: 245 RIRLKLDDGSTYAHEGRLKFSGVSVNEGTGTVTLRAQIANPDRLLLPGMYVRAVLEQARD 304
           +++L L +GS Y+  G L+FS V+V+E TG++TLRA   NP   LLPGM+VRA L +  +
Sbjct: 244 QVKLLLQNGSEYSQTGTLEFSDVTVDETTGSITLRAVFPNPGHTLLPGMFVRARLNEGTN 303

Query: 305 DKAILIPQKAVTRSASG-ATSVLVVVDGKVEQRMLTIDRAVDNQWWVTAGLNAGDQVIVE 363
             A+L+PQ+AVTR+ +G AT+++V  D KV  R LT ++A+ ++W VT GL AGD+VI  
Sbjct: 304 PNALLVPQQAVTRTPTGQATAMVVEADNKVAVRNLTAEQAIGDKWLVTDGLKAGDKVITT 363

Query: 364 GGQKVRVGETVVAQNTGT 381
           G Q+ + G  V  Q   T
Sbjct: 364 GIQRAKPGIQVTPQEVST 381