Pairwise Alignments

Query, 397 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

Subject, 373 a.a., efflux transporter periplasmic adaptor subunit from Escherichia coli ECRC102

 Score =  312 bits (800), Expect = 9e-90
 Identities = 173/365 (47%), Positives = 253/365 (69%), Gaps = 8/365 (2%)

Query: 15  ILVCLIVLFMLGGCSGESA--PTPEPPKVSVITVQPQSQALTTELAGRTQAFMVAEIRPQ 72
           I   ++ + +L GC    +   +P   +V V+TV+ Q  ++ +EL GRT A + AE+RPQ
Sbjct: 4   IATSVVAMLLLSGCDNTQSNNSSPSETEVGVVTVKSQPVSVVSELTGRTSAALSAEVRPQ 63

Query: 73  VGGIVQQRLFVEGAEVKAGQALYQLDASSYKAALAEAQANLAKARATLKSAQATAKRDAQ 132
           VGGI+Q+RLF EG  VKAGQ LYQ+DA+SY+AA  EA+A L +A+A +K+    A+R A+
Sbjct: 64  VGGIIQKRLFKEGDLVKAGQPLYQIDAASYQAAWNEARAALQQAQALVKADCQKAQRYAR 123

Query: 133 LVKIDAISQQDNEDAQANLMTAEAEVQVAQADVDTARINLAYTRISSPVSGRVETSTVTP 192
           LVK + +SQQD +DAQ+     +A V   +A ++TARINL +T +++P+SGR+  S+VTP
Sbjct: 124 LVKENGVSQQDADDAQSTCAQDKASVAAKKAALETARINLDWTTVTAPISGRIGISSVTP 183

Query: 193 GALVVANQDSALTTVQQLDPMYVDVTQSTTELLRLKRDLASGVLQSNGEGEARIRLKLDD 252
           GALV A+QD+ALTT++ LD MYVD+T+S+ +LLRL++      L +N +    + L L+D
Sbjct: 184 GALVTASQDTALTTIRGLDTMYVDLTRSSVDLLRLRKQ----SLATNSD-TMSVSLILED 238

Query: 253 GSTYAHEGRLKFSGVSVNEGTGTVTLRAQIANPDRLLLPGMYVRAVLEQARDDKAILIPQ 312
           G+TY+ +GRL+ + V+V+E TG+VTLRA   NP + LLPGM+VRA +++   + AIL PQ
Sbjct: 239 GTTYSEKGRLELTEVAVDESTGSVTLRAIFPNPQQQLLPGMFVRARVDEGVMEDAILAPQ 298

Query: 313 KAVTRSASG-ATSVLVVVDGKVEQRMLTIDRAVDNQWWVTAGLNAGDQVIVEGGQKVRVG 371
           + VTR A G AT+++V  D KVEQR L       ++W V  GL++GD++IVEG  KV  G
Sbjct: 299 QGVTRDAKGNATALVVNKDNKVEQRTLETGETYGDKWLVLNGLHSGDRLIVEGSAKVTSG 358

Query: 372 ETVVA 376
           +TV A
Sbjct: 359 QTVKA 363