Pairwise Alignments

Query, 397 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

Subject, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  313 bits (802), Expect = 6e-90
 Identities = 171/385 (44%), Positives = 254/385 (65%), Gaps = 6/385 (1%)

Query: 8   KSLVTAAILVCLIVLFMLGGCSGES----APTPEPPKVSVITVQPQSQALTTELAGRTQA 63
           + L   A ++ L    +L GC  ++    A     P+V +IT++ Q+  + TEL GRT A
Sbjct: 5   RRLTPLAAMLMLSGGLVLTGCDNKASQGGAQQGGAPEVGIITIKSQTLNIITELPGRTSA 64

Query: 64  FMVAEIRPQVGGIVQQRLFVEGAEVKAGQALYQLDASSYKAALAEAQANLAKARATLKSA 123
           + +AE+RPQV GI+ +R FVEG++VKAG +LYQ+D ++Y+A    A+A L +A+A  + A
Sbjct: 65  YRIAEVRPQVNGIILKRNFVEGSDVKAGTSLYQIDPATYQAQYNNAKAALVQAQANAEIA 124

Query: 124 QATAKRDAQLVKIDAISQQDNEDAQANLMTAEAEVQVAQADVDTARINLAYTRISSPVSG 183
           Q T  R   L+  + +S+QD + A A     EA V  A+A +D A+I+L YTR+++P++G
Sbjct: 125 QLTVNRYKPLLGTNYVSKQDYDQAVATARQTEAAVAAAKASLDNAQISLNYTRVTAPITG 184

Query: 184 RVETSTVTPGALVVANQDSALTTVQQLDPMYVDVTQSTTELLRLKRDLASGVLQSNGEGE 243
           RV  STVT GALV   Q +A+TT+QQLDP+YVDVTQST + LRLK++L SG LQ    G+
Sbjct: 185 RVGKSTVTEGALVSNAQATAMTTIQQLDPIYVDVTQSTNDFLRLKKELESGTLQQT-NGK 243

Query: 244 ARIRLKLDDGSTYAHEGRLKFSGVSVNEGTGTVTLRAQIANPDRLLLPGMYVRAVLEQAR 303
           A ++L LD G+ Y+  G L+FS V+V+E TG++TLRA   NPD  LLPGM+VRA L+   
Sbjct: 244 ANVQLTLDSGTRYSQAGTLEFSDVTVDETTGSITLRAVFPNPDHNLLPGMFVRAQLDSGV 303

Query: 304 DDKAILIPQKAVTRSASGATSVLVVVDG-KVEQRMLTIDRAVDNQWWVTAGLNAGDQVIV 362
              AIL+PQ+ V+R+  G  +V++V +G KVE   +T  +A+ ++W VT+G+ +GD++I+
Sbjct: 304 TPNAILVPQQGVSRTPRGDATVMLVGEGDKVEVHSITTGQAIGDKWLVTSGVKSGDRIIL 363

Query: 363 EGGQKVRVGETVVAQNTGTRSRTQK 387
            G QK+R G  V AQ     +  Q+
Sbjct: 364 TGLQKIRPGMQVKAQEAAAGNAQQQ 388