Pairwise Alignments

Query, 397 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N2E2

Subject, 388 a.a., periplasmic multidrug efflux lipoprotein precursor from Caulobacter crescentus NA1000 Δfur

 Score =  322 bits (825), Expect = 1e-92
 Identities = 181/358 (50%), Positives = 240/358 (67%), Gaps = 9/358 (2%)

Query: 38  PPKVSVITVQPQSQALTTELAGRTQAFMVAEIRPQVGGIVQQRLFVEGAEVKAGQALYQL 97
           P +V  I  Q QS  L+TELAGRT A++V+E+RPQV G++Q+RLF EGA V+AGQ LYQ+
Sbjct: 39  PTEVGYIVAQSQSVGLSTELAGRTSAYLVSEVRPQVSGVIQKRLFEEGAVVRAGQPLYQI 98

Query: 98  DASSYKAALAEAQANLAKARATLKSAQATAKRDAQLVKIDAISQQDNEDAQANLMTAEAE 157
           D ++Y+AA   A A LA+A+A   +A+  A R   LV+  A+S+QDN+DAQA  +   A 
Sbjct: 99  DPATYQAAYNSAAAALAQAQAQATAAKLKADRYKALVETGAVSRQDNDDAQAAALQTAAA 158

Query: 158 VQVAQADVDTARINLAYTRISSPVSGRVETSTVTPGALVVANQDSALTTVQQLDPMYVDV 217
           V V +A +D+ARINL Y R+++P+SGR+  S+VT GALV ANQ +AL TVQ L  +YVD+
Sbjct: 159 VGVQKAALDSARINLNYARVTAPISGRIGKSSVTAGALVTANQATALATVQDLSKVYVDL 218

Query: 218 TQSTTELLRLKRDLASGVLQSNGEGEARIRLKLDDGSTYAHEGRLKFSGVSVNEGTGTVT 277
           TQ++ ELL+L+   ASG  +    G A++ LKL+DGSTY   GRL+FS ++V+ GTG V 
Sbjct: 219 TQTSAELLKLQAQFASG--KVGRSGSAQVTLKLEDGSTYPIPGRLEFSDITVDPGTGAVG 276

Query: 278 LRAQIANPDRLLLPGMYVRAVLEQARDDKAILIPQKAVTRSASGATSVLVVVDGKVEQRM 337
           LRA   NP  +LLPGMYVRAVL Q      ILIPQ AV R   G  +V++V     E R 
Sbjct: 277 LRAVFDNPKGVLLPGMYVRAVLSQGVAPSGILIPQTAVNRDPKGGATVMLVGAKGPEPRP 336

Query: 338 LTIDRAVDNQWWVTAGLNAGDQVIVEGGQKVRVGETVVAQNTGTRSRTQKATPVAIAQ 395
           +T+ + V ++W VT+GLNAGD+VIVEG  KVR G  + A   G       A P A AQ
Sbjct: 337 VTLGQTVGDKWLVTSGLNAGDKVIVEGLMKVRPGAPIKAVPAG-------AAPAAQAQ 387