Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

Subject, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score =  271 bits (692), Expect = 5e-78
 Identities = 138/168 (82%), Positives = 151/168 (89%)

Query: 1   MNAFDEQLRELIPRLRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSI 60
           M+  DEQLRELIPRLRRFAVSLTRN S+ADDLVQ  LERA+  W DKR +GDLRAWLFSI
Sbjct: 1   MHELDEQLRELIPRLRRFAVSLTRNASSADDLVQSTLERAIISWADKRVEGDLRAWLFSI 60

Query: 61  LYRQFLDSHRRSRRYARMLEFFTGRDDAHPSAERSVIAQSSLQAFDQLTTEQRALLLWVS 120
           LYRQFLD+HRR+RRYARMLEFFTGRDDA PS ER+VIAQS+LQAFDQL TEQRALLLWVS
Sbjct: 61  LYRQFLDAHRRTRRYARMLEFFTGRDDAQPSVERTVIAQSTLQAFDQLNTEQRALLLWVS 120

Query: 121 VEGLSYQQIADILGVPTGTVMSRLSRARQALRQLSDGEVTRPTLRILK 168
           VEGLSY++IA+IL VP GTVMSRLSRARQALR LSDGE+  P+LRILK
Sbjct: 121 VEGLSYKEIAEILEVPIGTVMSRLSRARQALRLLSDGEIASPSLRILK 168