Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score =  177 bits (450), Expect = 6e-50
 Identities = 102/169 (60%), Positives = 123/169 (72%), Gaps = 6/169 (3%)

Query: 5   DEQLRELIPRLRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSILYRQ 64
           D Q REL+ RLRRFAV LTR P +ADDLVQ  +ERALS+ + +R    LRAWLF+ILYRQ
Sbjct: 6   DHQWRELLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQ 65

Query: 65  FLDSHRRSRRYARMLEFFTGRD--DAHP---SAERSVIAQSSLQAFDQLTTEQRALLLWV 119
           FLD  RR R +AR L +F GR+  D  P   + E  V+AQ+ LQAF +LT EQRALLL V
Sbjct: 66  FLDGKRRERLHARWLSWF-GRNEHDDEPVGDNLETIVLAQADLQAFARLTAEQRALLLLV 124

Query: 120 SVEGLSYQQIADILGVPTGTVMSRLSRARQALRQLSDGEVTRPTLRILK 168
           S+EGLSY++ A  LG+P GTVMSRLSRAR ALR+L++G    P LR LK
Sbjct: 125 SIEGLSYKEAAQALGIPIGTVMSRLSRARNALRELTEGNPQPPALRRLK 173