Pairwise Alignments

Query, 220 a.a., ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data) from Pseudomonas fluorescens FW300-N2E2

Subject, 219 a.a., amino acid ABC transporter permease from Pseudomonas fluorescens SBW25

 Score =  137 bits (346), Expect = 1e-37
 Identities = 83/214 (38%), Positives = 121/214 (56%), Gaps = 1/214 (0%)

Query: 6   SWLHELWVARDTLWAGFLTSVQCSLLAIVLGTLIGLVAGLVLTYGRTWMRAPFRFYVDLI 65
           S L  LWV+   L  G   ++  S L+I   T+ G++ G++ T     + A  R Y++L 
Sbjct: 4   SGLELLWVSLPQLGKGAAQTLSISFLSIAFSTVGGVLYGVLRTLNNRLINAVLRVYLELF 63

Query: 66  RGTPVFVLVLACFYMAPAL-GWQIGAFQAGVLGLTLFCGSHVAEIVRGALQALPRGQMEA 124
           R  PV V +   F+  P   G  I +F   VL L+L+  S V E+VRGAL +LPRGQ EA
Sbjct: 64  RAIPVLVWLYLLFFGLPIFFGLSIPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQREA 123

Query: 125 SQAIGLTFYQSLGYVLLPQALRQILPTWVNSSTEIVKASTLLSVIGVAELLLSTQQIIAR 184
             +IGL+  Q  GYVLLPQAL+++ P  +N  T I+K S+L  +IGV +++   QQII R
Sbjct: 124 GLSIGLSDPQLYGYVLLPQALKRMTPPTINVYTRIIKTSSLAVLIGVVDVIKVGQQIIER 183

Query: 185 TFMTLEFYLFAGFLFFIINYAIELLGRHIEKRVA 218
           T+ ++  Y      FF I Y +    + +E+R A
Sbjct: 184 TYESVLIYGVLFLFFFFICYPLSAASKVLERRWA 217