Pairwise Alignments

Query, 540 a.a., 3-methylmercaptopropionyl-CoA ligase (DmdB) from Pseudomonas fluorescens FW300-N2E2

Subject, 555 a.a., Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  234 bits (597), Expect = 6e-66
 Identities = 172/551 (31%), Positives = 262/551 (47%), Gaps = 35/551 (6%)

Query: 6   QGFAPTGVNHTALTPLSFIERTASVYPDYPAVIH----GSIRRTWADTYRRCRRLASALA 61
           +G   T  N   L   + I   A  + D   V      G  R T+A+ Y R  R A+AL 
Sbjct: 9   RGCPSTTGNERQLNTTTLIRHAARTHGDQEIVYRTPDGGWDRYTYAECYARVCRSANALR 68

Query: 62  GRGIGKNDTVAVMLPNIPAMLEAHFGVPMIGAVLNALNVRLDAEAIAFMLAHGEAKVLIA 121
             G+   D V ++  N     E ++ +P +GAV+  +N+RL AE + +++ H +   +  
Sbjct: 69  ALGVEPGDRVGILDWNSRRHFELYWSIPGLGAVMLQMNLRLGAEDLGYVVGHSKVSYVCV 128

Query: 122 DREFHDVVQAAIGMLDHPPLVIDLDDPEYGEGQAVSE--LDYEAFLAEGDPDFAWQWPD- 178
           D     + ++           I + D    + +   +  L YE  +A  D      WP+ 
Sbjct: 129 DESLLPIAESVAANSPQIKGWIVMTDKPLDQIKTTLKPLLHYEDLMAAADTKI--DWPEI 186

Query: 179 DEWQAISLNYTSGTTGNPKGVVYHHRGAYLNSLGNQMTWAMGNHPVYLWTLPMFHCNGWC 238
           DE  A S  YT+GTTG PKGV Y HRG YL+S        M      +   PMFH   W 
Sbjct: 187 DETSAYSACYTTGTTGKPKGVYYSHRGIYLHSTAMATNLGMTLDDCVMLITPMFHGQCWG 246

Query: 239 YPWTVTALAGVHVFLRRV---DPQKILNLIREHQITHLCGAPIVLNALVNMPDSAKAAID 295
            P   T LA   V   R    D + +++ +    +T   GAP +   ++   ++     D
Sbjct: 247 LPQAATLLADKIVLPGRYAAEDTKPLVDAMIAEGVTITNGAPAIFQPMLQYIETMPVKPD 306

Query: 296 HPVSAMVAGAAPP--AKVIGAVEEMGIKVTHVYGLTEVYGPVTLCAWHAAWDE-LPLEQR 352
                M++GA+ P  + +IG  +  G +V H YG TE    VT+        + L  ++R
Sbjct: 307 FGRMRMLSGASEPPLSMMIGFYDLTGAEVVHAYGATEATTLVTVNRLKPTLSKRLTQDER 366

Query: 353 AQIKARQGVRYPTLEGLMVADPRTL----EPTPHDGQTIGEIFMRGNTVMKGYLKNPSAT 408
             +K +QG+    L G+   D R L    +  PHDGQ+ GEI +RG  +   Y   P + 
Sbjct: 367 WNLKRKQGL---VLTGV---DIRILNANDQDLPHDGQSAGEICLRGPWITTSYHDMPDSG 420

Query: 409 AEAFEGGWFHTGDLAVTHADGYVEIRDRLKDIIISGGENISTIELEGVLYRHPAVLEAAV 468
               EGGW+ +GD+     +GY+++ DR+KD+I SGGE IS+I++E +L  H AV +AAV
Sbjct: 421 DRFLEGGWWRSGDVGTVDENGYLKVTDRIKDVIKSGGEWISSIDMENLLMGHSAVRDAAV 480

Query: 469 VARPDEKWGETPCAFITLKSDHTDVREAEIISFCREHL----AGFKVPRTVVFTQ-LPKT 523
           V  P  KW E P A + LK      +E       +EHL    A +++P  V+F + +PKT
Sbjct: 481 VGIPHAKWQERPLALVVLKPGQQATQEQ-----LQEHLTSAFAKWQLPDQVLFVEAIPKT 535

Query: 524 STGKIQKFVLR 534
           S GK+ K  +R
Sbjct: 536 SVGKLDKKRIR 546