Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  174 bits (441), Expect = 7e-49
 Identities = 91/166 (54%), Positives = 122/166 (73%), Gaps = 3/166 (1%)

Query: 6   PANNDQHLRVIEDLYAGHHSWLYATLKKKLGNAMDAADLAQDTFTRILASQVTAI--DQP 63
           PA    +L+V + LY  HH WL   L +KLGNA DAADLA DTF R+L+ Q      ++P
Sbjct: 3   PAEPSLNLQV-QTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEP 61

Query: 64  RAYLSCVAKGILINWYQRKALERAYLEALAHLPAEEVPSPELRFLVLETLHEIDAMLDTL 123
           RA L+ +AKG++++ ++R+ +ERAYLEA+AHLP  EVPSPE R+L+LETL+ IDAML  +
Sbjct: 62  RALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDM 121

Query: 124 PAPVKRAFLLSQIGGLKYDDIAQQLNVSLITVKRYMKQAFVQCLML 169
           PA V++ FLLSQ+ GL Y  IA+QL VSLIT+KR M+ AF+ CL +
Sbjct: 122 PARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSI 167