Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

Subject, 173 a.a., KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) from Escherichia coli BW25113

 Score =  141 bits (356), Expect = 5e-39
 Identities = 72/153 (47%), Positives = 104/153 (67%), Gaps = 1/153 (0%)

Query: 17  EDLYAGHHSWLYATLKKKLGNAMDAADLAQDTFTRILASQ-VTAIDQPRAYLSCVAKGIL 75
           E LY  HH WL + L +KL +A DA D+AQDTF R++ S+ ++ I  PR++L  +AK ++
Sbjct: 14  ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVM 73

Query: 76  INWYQRKALERAYLEALAHLPAEEVPSPELRFLVLETLHEIDAMLDTLPAPVKRAFLLSQ 135
           ++ ++R ALE+AYLE LA +P    PSPE R   LETL  +D+MLD L    + AFLLSQ
Sbjct: 74  VDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQ 133

Query: 136 IGGLKYDDIAQQLNVSLITVKRYMKQAFVQCLM 168
           + GL Y +IA +L VS+ +VK+Y+ +A   CL+
Sbjct: 134 LDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLL 166