Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1049 a.a., hydrophobe/amphiphile efflux-1 family RND transporter from Ralstonia solanacearum PSI07

 Score = 1323 bits (3423), Expect = 0.0
 Identities = 678/1027 (66%), Positives = 818/1027 (79%), Gaps = 4/1027 (0%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            M +FFIDRPVFAWV+ALFI++AG +++ QLP+AQYP +APP I I   YPGASA+T+D++
Sbjct: 1    MAKFFIDRPVFAWVLALFIIVAGAISVTQLPIAQYPTIAPPSIIITATYPGASAKTLDDA 60

Query: 61   VVSLIEEELNGADNLLYFES--QSSLGSATITATFQPGTNPELAQVDVQNRLKAVESRLP 118
            V S+IE+E+NGAD LLY ES  Q+  G ATIT TF+PGT+P LAQVDVQNRLK VE+RLP
Sbjct: 61   VTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQNRLKRVEARLP 120

Query: 119  QAVTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYG 178
             +VTQQG+QVDK  + FLL  TL S DGK+D VAL DY++RNV+NEIKR+ GVG+A L+G
Sbjct: 121  SSVTQQGVQVDKTRSNFLLFATLASKDGKMDPVALGDYISRNVLNEIKRVPGVGQAVLFG 180

Query: 179  AERAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKGQ 238
             ERAMRIWIDP KLVG+ LTP DV  AI  QNA VSAG+LGDLPS   Q I AT+VV+GQ
Sbjct: 181  TERAMRIWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSNQPIAATVVVEGQ 240

Query: 239  LNTPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANA 298
            + T ++F +IVL + PDGS VRI DVAR+E+G Q Y  S R+NG+P +A+ VQLSP  NA
Sbjct: 241  MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNA 300

Query: 299  LNTATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFL 358
            L TA  V+ K+DELS YFPAGVEYK+PYDTS FV++SI +V+ TL EAM LVF VM +FL
Sbjct: 301  LGTAKAVKAKLDELSKYFPAGVEYKVPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFL 360

Query: 359  QNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 418
            QNIRYTLIP++VVP++L+G FATM ALGFSINVLTMFG+VLAIGILVDDAIVVVENVERI
Sbjct: 361  QNIRYTLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENVERI 420

Query: 419  MAREGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSIL 478
            M+ EGL P+EATRKAMGQITGAIIGITLVL+AVFIPMAF  GSVG IY+QFSLSM  SI 
Sbjct: 421  MSEEGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIF 480

Query: 479  FSAFLALTLTPALCATLLKPLAQGDHHAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSGR 538
            FSA +ALTLTPALCATLLKP+ +G HH K GFFG FNR F     RYQ  V   +K++ R
Sbjct: 481  FSALMALTLTPALCATLLKPIEKGSHHEKKGFFGWFNRMFTSTTNRYQSLVERMLKKTFR 540

Query: 539  YLLIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAHNAG 598
            Y++IYG L+  + +LF RLPSSFLP EDQGY IT+IQLPP AS NRT++V++++E +   
Sbjct: 541  YMVIYGALIAAVVLLFMRLPSSFLPNEDQGYIITNIQLPPAASANRTLEVIKKVEGYYQH 600

Query: 599  EPGVGDSTIILGFSFSGSGQNAALAFTTLKDWSQRGAEDSAASIADRANLAL-GQIKDAM 657
            E  V +   + GFSFSG+G NAAL FTTLKDWSQRGA+ +A ++A RA  AL G I+DA+
Sbjct: 601  EKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQRGADQTADAVAGRAFGALFGGIRDAI 660

Query: 658  AFSVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESALAE 717
             F + PPP+  LG ++GF FRLQDRGGLGH  LM AR++LL  A +S +L NVR   L +
Sbjct: 661  VFPLNPPPIPELGNATGFTFRLQDRGGLGHDALMAARNQLLGMAGQSKILKNVRPDGLED 720

Query: 718  APQVQLEVDRKQANALGISFADVGSVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRSQV 777
            +PQ Q+++DR++ANALG++F D+ SVLSTA+GSAY NDFPN GR QRV+VQA+   R Q 
Sbjct: 721  SPQYQVDIDREKANALGVAFTDINSVLSTALGSAYANDFPNYGRQQRVIVQADKINRMQP 780

Query: 778  EDLLKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAMAE 837
            ED++ ++VRN  G MVP+SAF +  W  GP QL RYNGYP+V ISG+   G STG AM E
Sbjct: 781  EDIMNLYVRNTQGSMVPMSAFAKGHWMVGPVQLVRYNGYPSVRISGDATTGVSTGDAMDE 840

Query: 838  IERLVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTSVLL 897
            +ERL +  P G+G EWTG SLQE+ SGSQAP L  LSLL VFL LAALYESWSIP +V+L
Sbjct: 841  MERLASRLPAGIGFEWTGQSLQEKSSGSQAPALYALSLLAVFLVLAALYESWSIPAAVIL 900

Query: 898  VVPLGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDAT 957
            VVPLGVLG +L V+LR MP+DV+FK+GLI ++GLSAKNAILIIEFAK L  +G  LI+AT
Sbjct: 901  VVPLGVLGTLLGVTLRVMPDDVYFKVGLIAVVGLSAKNAILIIEFAKDLQAQGKGLIEAT 960

Query: 958  LQAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFVPV 1016
            L+A  LR RPIIMTS AFILGV+PLAIATGASSASQ+AIGTGV+GGMI AT LAVV VPV
Sbjct: 961  LEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMIAATVLAVVLVPV 1020

Query: 1017 FFVVVMK 1023
            FFVVV +
Sbjct: 1021 FFVVVRR 1027