Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

Subject, 1036 a.a., multidrug efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

 Score = 1159 bits (2997), Expect = 0.0
 Identities = 597/1030 (57%), Positives = 774/1030 (75%), Gaps = 7/1030 (0%)

Query: 1    MPQFFIDRPVFAWVVALFILLAGILAIPQLPVAQYPVVAPPQIEIYTVYPGASAQTVDES 60
            M  FFI+RP FAWV+ALFI+LAG L + +LPV+QYP VAPPQI +   YPGASAQ ++ +
Sbjct: 1    MVDFFIERPNFAWVIALFIVLAGALTLGRLPVSQYPDVAPPQISVSASYPGASAQIINLN 60

Query: 61   VVSLIEEELNGADNLLYFESQSSLGSATITATFQPGTNPELAQVDVQNRLKAVESRLPQA 120
            V SL+EEELNG  +LLY+ES S+ GSA  T TF+PGT+P+ AQ+DVQNRL+ V  RLPQA
Sbjct: 61   VTSLLEEELNGLPDLLYYESTSANGSADTTVTFKPGTDPDRAQIDVQNRLQRVVGRLPQA 120

Query: 121  VTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGAE 180
            V +QGL+V++V A FL++  L+ +D + D V L+D+ AR V NEI+R+ GVG+ ++Y AE
Sbjct: 121  VIEQGLKVEQVRANFLMIYALSYTDEQQDSVGLADFAARAVNNEIRRVAGVGRVEMYTAE 180

Query: 181  RAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRHTQEITATIVVKGQLN 240
            RAMRIW+DP +LVG+ L+ ADV+ AI AQN QV AGS+G+ P    Q+ITAT++V+GQL 
Sbjct: 181  RAMRIWVDPAELVGYGLSMADVSKAIAAQNVQVPAGSMGERPGPVDQQITATVMVQGQLE 240

Query: 241  TPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANALN 300
            + + F +IVL+AN DG++VRI DVARVE+G Q+Y+F  RLNGKP  A++VQL+PG NAL 
Sbjct: 241  SVEAFGNIVLRANDDGASVRIHDVARVELGRQDYRFDARLNGKPVAAMSVQLAPGGNALQ 300

Query: 301  TATLVRNKMDELSHYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQN 360
            TA  V+ +++ LS   P  +   +PYDT+PFV+ +I +V+YTL EAM+LVF VM+LFLQ 
Sbjct: 301  TAQAVKARLEHLSSTLPGNMRLSVPYDTAPFVQAAIKQVVYTLIEAMVLVFLVMWLFLQK 360

Query: 361  IRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMA 420
            +RYTLIP +VVPV L GT A M  LGFSIN++T+FGMVLAIG+LVDDAIVVVE+VER+++
Sbjct: 361  LRYTLIPAVVVPVCLSGTLAVMGVLGFSINMMTLFGMVLAIGMLVDDAIVVVESVERLIS 420

Query: 421  REGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMHGSVGVIYQQFSLSMATSILFS 480
            +E LSPK+ATRKAM QI+GAI+GITLVL  VF+P+AFM GSVGVIYQQF+L ++ SILFS
Sbjct: 421  QERLSPKDATRKAMRQISGAIVGITLVLATVFLPLAFMGGSVGVIYQQFALVLSVSILFS 480

Query: 481  AFLALTLTPALCATLLKPLAQGDHHAKTGFFGMFNRGFDRFGERYQGWVAYAVKRSGRYL 540
             FLALTLTPALCA LLKP         T     FNR FDR    Y+      V+R  R +
Sbjct: 481  GFLALTLTPALCAALLKPF------DPTRRVPGFNRHFDRLTAHYERVAGTWVRRGTRSV 534

Query: 541  LIYGVLLVGMGVLFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAHNAGEP 600
             +Y +LL  + + + RLPSSF+P EDQGYT+TDIQLPP AS  RT   V   E +   +P
Sbjct: 535  CLYLLLLAVLVLAYHRLPSSFIPSEDQGYTVTDIQLPPAASAARTEVTVNAWEQYALAQP 594

Query: 601  GVGDSTIILGFSFSGSGQNAALAFTTLKDWSQRGAEDSAASIADRANLALGQIKDAMAFS 660
                   ILGFSFSG G NAAL++ +LKDWS RG++ ++ ++A RA  A   + D   FS
Sbjct: 595  ATHQVLSILGFSFSGEGANAALSYISLKDWSVRGSDQASRAVAQRATRAFEDVSDGSVFS 654

Query: 661  VLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESALAEAPQ 720
             +PP VDGLGTS+GFE RLQD  G  HA L+ AR++LLAAA  SP++ ++R+  LA+APQ
Sbjct: 655  TVPPAVDGLGTSAGFELRLQDLTGHPHAELLGARAQLLAAAKASPVIGSLRDEGLADAPQ 714

Query: 721  VQLEVDRKQANALGISFADVGSVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRSQVEDL 780
            +++++DR++A ALG+SF  + + LS A+GS  IN+F NQGRMQRV+VQA+G  R   E L
Sbjct: 715  IKIDIDREKAEALGVSFDVISAALSAALGSQQINEFANQGRMQRVIVQADGSSRQTPEAL 774

Query: 781  LKIHVRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAMAEIER 840
            L++ V N   K+VPL AF +  W  GP Q+ RYNG  ++  +G+ A GYSTGQAM  ++ 
Sbjct: 775  LRLQVPNRQNKLVPLEAFSRFEWQVGPLQIVRYNGSQSLRFTGDAAAGYSTGQAMQALQD 834

Query: 841  LVALGPTGLGQEWTGLSLQERLSGSQAPILLGLSLLVVFLCLAALYESWSIPTSVLLVVP 900
            + A  P G   EW GLSLQE+ S +Q P+L+GLSLL V L L ALYESW+IP +VLL+VP
Sbjct: 835  IAAQLPAGFSLEWAGLSLQEQQSSAQVPLLMGLSLLTVLLVLVALYESWAIPFAVLLIVP 894

Query: 901  LGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDATLQA 960
            +GVLG+V AV++ GMPNDV+FK+GL+TIIGLSAKNAILI+EFAK+L+ +G  L +A +QA
Sbjct: 895  VGVLGSVAAVTVMGMPNDVYFKVGLVTIIGLSAKNAILIVEFAKALHAQGASLANAAIQA 954

Query: 961  ARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFVPVFFV 1019
            ARLR RPIIMTSLAFILGVVPLA+ATG  +ASQQAIGTGVIGGM+ AT L V++VPV FV
Sbjct: 955  ARLRFRPIIMTSLAFILGVVPLALATGPGAASQQAIGTGVIGGMLAATVLGVLWVPVLFV 1014

Query: 1020 VVMKRVRRVE 1029
             VM   +R++
Sbjct: 1015 KVMSVSQRLQ 1024