Pairwise Alignments

Query, 333 a.a., Xylose ABC transporter, periplasmic xylose-binding protein XylF from Pseudomonas fluorescens FW300-N2E2

Subject, 311 a.a., D-allose transporter subunit (NCBI) from Escherichia coli BW25113

 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 74/258 (28%), Positives = 115/258 (44%), Gaps = 15/258 (5%)

Query: 59  VFVQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLI- 117
           +F   ++ + Q Q+   E+L ++    I   P ++  L   VA A K GI +V+ D  I 
Sbjct: 59  IFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKID 118

Query: 118 ------LNADIDAYISFDNEKVGEMQASGVLK--AAPKGNYFLLGGAPTDNNAKVLREGQ 169
                    +++A+++ DN  VG   AS ++    A  G   ++ G   + + +  R G 
Sbjct: 119 MDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGA 178

Query: 170 MKVLQPAIDKGDIKIVGQQWVKEWNPTEALSIVENALTRNNNKIDGIVASNDATAGGAIQ 229
            +  + A     IK+V  Q   +W+  +AL +  N L RN N I  I  +ND  A G  Q
Sbjct: 179 TEAFKKA---SQIKLVASQ-PADWDRIKALDVATNVLQRNPN-IKAIYCANDTMAMGVAQ 233

Query: 230 ALAAQKMAGKVPISGQDADLAAVKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEKPT 289
           A+A     GKV + G D    A K V  G  T TV +    I +   KL V   ++ K  
Sbjct: 234 AVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGK-V 292

Query: 290 FSSQYDNGSKKVDTILLT 307
                    K VD+IL+T
Sbjct: 293 IPLDKAPEFKLVDSILVT 310