Pairwise Alignments

Query, 318 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas fluorescens FW300-N2C3

Subject, 319 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Escherichia coli ECRC98

 Score =  350 bits (898), Expect = e-101
 Identities = 185/314 (58%), Positives = 240/314 (76%), Gaps = 9/314 (2%)

Query: 8   TPGVQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGD 67
           TP V+++ ++ + AGQRIDNFL  +LKGVPK++IYRILRKGEVRVNK RIKPEYKL+AGD
Sbjct: 5   TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64

Query: 68  IVRVPPVRVPERDEPVPLAQGLLQRLEAS---IVYEDKALIVINKPAGIAVHGGSGLNFG 124
            VR+PPVRV ER+E        LQ++ A    I+YED  ++V+NKP+G AVHGGSGL+FG
Sbjct: 65  EVRIPPVRVAEREEEAVSPH--LQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122

Query: 125 VIEAFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHEQLRGDGVDKRYMALVRG 184
           VIE  R LRP+A+ LELVHRLDRDTSG+L++AKKRS LR LHEQLR  G+ K Y+ALVRG
Sbjct: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182

Query: 185 RWETSIKQVRAPLLKSNLRSGERMVEVNEEGKEALTVFKVLRRFDDFATLVEAKPVTGRT 244
           +W++ +K V+APLLK+ L+SGER+V V++EGK + T FKV  R+  FATLV   PVTGRT
Sbjct: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AFATLVRCSPVTGRT 241

Query: 245 HQIRVHTLHAGHCIAGDSKYGDDDFTKEIRDLGG--KRLFLHAYMLTVPLPDGGE-LKLQ 301
           HQIRVHT +AGH IA D +YGD +F +++ + G    RLFLHA  L    P  GE ++++
Sbjct: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301

Query: 302 APVDDMWAKTVERL 315
           AP+DD   + +++L
Sbjct: 302 APMDDGLKRCLQKL 315