Pairwise Alignments

Query, 944 a.a., ABC-ATPase UvrA from Pseudomonas fluorescens FW300-N2C3

Subject, 973 a.a., ABC excinuclease subunit A from Agrobacterium fabrum C58

 Score = 1152 bits (2981), Expect = 0.0
 Identities = 588/963 (61%), Positives = 732/963 (76%), Gaps = 25/963 (2%)

Query: 1   LDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           L  I IRGAR HNLK IDL LPR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 4   LKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120
           ARQFL MM+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEIYDY+RLL+ARVG+P  
Sbjct: 64  ARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYS 123

Query: 121 PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVVRERKGEHLMVFEELRAQGFVRARVN 180
           P   +P+E+QTVSQMVD +LA  EG++L +LAP+VR RKGE+     EL  +GF R +V+
Sbjct: 124 PATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRVKVD 183

Query: 181 GKLCELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMD-- 238
           G+  E+ ++P LDK+ KH IDVVVDR  VR D+  RLA+S ET LKLADG+A+    D  
Sbjct: 184 GQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFADKP 243

Query: 239 ----------------DEPGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDG 282
                           +E  E ++FS +FACP+ G  I E+EP+LFSFNNP GACP+CDG
Sbjct: 244 LPPEDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDG 303

Query: 283 LGVKQFFDTKRLV-NGELTLAEGAIRGWDRRNV-YYFQMLGSLAAHYKFSLDKPFNELPA 340
           LG +Q  D   +V     TL +GAI  W + +  YY Q L +L   + F L   + +L  
Sbjct: 304 LGSQQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSK 363

Query: 341 DQQKSILHGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL 400
           + Q +IL G+  + ++F Y  D     K    FEGIVPNLERR++ET+SA  REE+ +++
Sbjct: 364 EAQHAILQGTDDK-IEFNY-QDGARSYKTVKNFEGIVPNLERRWKETDSAWAREEIERYM 421

Query: 401 STQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDATDYFGGL--KLTGRRGEIADKI 458
           S  PCP C G RL+ EA  V + +  +  VT + I  A D+F  L   L  ++ EIA +I
Sbjct: 422 SAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVRI 481

Query: 459 LKEIRERLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGL 518
           LKEIRERL+FL +VGLDYL+L R++ TLSGGE+QRIRLASQIG+GL GV+Y+LDEPSIGL
Sbjct: 482 LKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGL 541

Query: 519 HQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAE 578
           HQRDN RLL TLKHLRDIGNTVIVVEHDEDAI  ADYVVDIGP AG+HGG ++A+GT  +
Sbjct: 542 HQRDNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQD 601

Query: 579 VMAHPDSLTGKYLSGRVKIKVPAKRTPRNKKLSLTLKGARGNNLRNVDLEIPIGLLTCVT 638
           VMA+P SLTGKYLSG + + VPA+R    K   + + GARGNNL+NV   +P+G+ T VT
Sbjct: 602 VMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTAVT 661

Query: 639 GVSGSGKSTLINNTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRS 698
           GVSG GKST +  TL+  +A  + GA  + A  HD I G E +DKV+DIDQSPIGRTPRS
Sbjct: 662 GVSGGGKSTFLIETLYKSAARRVMGAREIPAE-HDRIDGFEFIDKVIDIDQSPIGRTPRS 720

Query: 699 NPATYTGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDI 758
           NPATYTG FTPIR+ FAG+PE+++RGY PGRFSFNVKGGRCEACQGDG+IK+EMHFLPD+
Sbjct: 721 NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDV 780

Query: 759 YVPCDVCKSKRYNRETLEIKYKGKNIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLS 818
           YV CDVC  KRYNRETL++ +KGK+I + L+MT+EE   FF AVPA+  KLQ+L DVGL 
Sbjct: 781 YVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLG 840

Query: 819 YIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLR 878
           YIK+GQ A TLSGGEAQRVKL++ELSKR TG+TLYILDEPTTGLHF D+ +LL++LH L 
Sbjct: 841 YIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHALV 900

Query: 879 DHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEQVAEMKQSYTGYYLKPL 938
           + GN+VVVIEHNL+VIKTADW++D+GPEGG+ GG+++A GTPE + ++++SYTG++LK L
Sbjct: 901 EQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL 960

Query: 939 LER 941
           L+R
Sbjct: 961 LDR 963



 Score =  130 bits (327), Expect = 4e-34
 Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 15/200 (7%)

Query: 405 CPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDATDYFGGLKLTGRRGEIADKILKEIRE 464
           C  C G R  RE   V    K++  V ++ + +  ++F  +                +R+
Sbjct: 784 CDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPA--------------VRD 829

Query: 465 RLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVG-VMYILDEPSIGLHQRDN 523
           +LQ L +VGL Y+ + + A+TLSGGEAQR++LA ++     G  +YILDEP+ GLH  D 
Sbjct: 830 KLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDV 889

Query: 524 DRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAHP 583
           ++LL  L  L + GN+V+V+EH+ + I+ AD+++DIGP  G  GG +VA GT  +++   
Sbjct: 890 NKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVE 949

Query: 584 DSLTGKYLSGRVKIKVPAKR 603
            S TG +L   +  +   KR
Sbjct: 950 RSYTGHFLKELLDRRPAGKR 969