Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 578 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  484 bits (1246), Expect = e-141
 Identities = 280/585 (47%), Positives = 367/585 (62%), Gaps = 26/585 (4%)

Query: 1   MRIEPRQLPDTLPFL---GDLPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAV 57
           M+I  R +P    +      L PLL RL+AARG+ S+ ELD +LARL+P   + G   A 
Sbjct: 1   MKIITRDVPPRAAWALEQSGLHPLLARLFAARGITSKDELDDALARLLPPSSMLGAQDAA 60

Query: 58  DLLVTALEQRQRILIVGDFDADGATASTVGMLGLRLLGAA----HVDYLVPNRFEYGYGL 113
             L  A+  ++ I IV D+D DGATA  VG+ GLRLLGA      V+YLVP+R   GYGL
Sbjct: 61  RALADAMAAQKNICIVADYDCDGATACAVGLRGLRLLGAPLGFDRVNYLVPDRVTDGYGL 120

Query: 114 TPEIVEVALARAPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGLE-----LPAAD 168
           TP I     A+   +L+TVDNGI+SV+GV AA+  GL V+VTDHHLP L+     LP   
Sbjct: 121 TPSIATRVKAQGADVLVTVDNGIASVDGVRAARELGLAVIVTDHHLPALKNGEIALPQDC 180

Query: 169 AIVNPNQPGCEFPSKALAGVGVIFYVLMALRARLRSLGWYASTPQPNIGELLDLVALGSV 228
            IVNPNQPGC F SK++AGVGV+FYVL+ALRA LR  G + +  QP I  LL LVALG+V
Sbjct: 181 IIVNPNQPGCPFESKSIAGVGVMFYVLLALRAELRERGVFTAQNQPKIDTLLPLVALGTV 240

Query: 229 ADVVPLDANNRILVHQGLERIRAGRARPGIKAILEVAKRDASRITSTDLGFILGPRLNAA 288
           ADVV LDANNR LV QGL+R+RAG   PG+ A+   A R  +  T  D GF LGPRLNAA
Sbjct: 241 ADVVKLDANNRRLVAQGLKRVRAGAMPPGMVALFNAAARKPAAATGFDFGFALGPRLNAA 300

Query: 289 GRLDDMSLGIECLLTDDPALAREMAAQLDGMNQDRKSIEQGMQREALAQLKDL--PVESM 346
           GRL DM+LGIECL TDD   A E+A  LDG+N++RK+IE  M+ +AL   +++    E  
Sbjct: 301 GRLADMTLGIECLTTDDGLRADELARTLDGINRERKAIEGDMREQALQMAEEMFDESEEP 360

Query: 347 PFGLCLFDPQWHQGVIGILASRMKERYFRPTIAFADAG----DGLLKGSGRSVPGFHIRD 402
           P  L +FDP +H+GV+GI+ASR+K++  RPT  FA +G    +  LKGSGRS+ GFH+RD
Sbjct: 361 PPALVVFDPDFHEGVVGIVASRLKDKLHRPTFVFAASGAEGKEHELKGSGRSIAGFHLRD 420

Query: 403 ALSVVAAQHPTLISKYGGHAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDG 462
           AL +VA +HP ++ ++GGHAMAAG T+ E     F  A        L    L  R+ +DG
Sbjct: 421 ALDLVAKRHPGVLLRFGGHAMAAGCTIDEEQLETFEAALQQVAHEWLDAATLQRRMEADG 480

Query: 463 TLAVEEFHLELARALRHAGPWGQHFPEPMFHGVFQLVEQRVVGERHLKVILKSECGSVKL 522
            L  +    +L   L H   WGQ F  P+F     +V QR+VGE+HL + LK +     +
Sbjct: 481 PLDTKYRRADLVDTL-HQEVWGQGFAPPVFCEEVVVVSQRLVGEKHLALKLKHQ--GEPV 537

Query: 523 DGIAFGIDREIWPNPTVRWVELAYKLDLNEFRGQETVQLMIAHIE 567
           DGI FG        P    V++A++LD +E++GQ  V+ ++   E
Sbjct: 538 DGIWFG-----HTEPLPARVKIAFRLDADEWQGQRRVRFLVEAAE 577