Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens FW300-N2C3

Subject, 602 a.a., single-stranded-DNA-specific exonuclease from Agrobacterium fabrum C58

 Score =  267 bits (683), Expect = 8e-76
 Identities = 199/557 (35%), Positives = 290/557 (52%), Gaps = 19/557 (3%)

Query: 18  LPPLLTRLYAARGVQSE---AELDKSLARLIPF-QQLKGIDAAVDLLVTALEQRQRILIV 73
           +P L+ R+ A RGV  +   A LD ++  L+P    L   + A + LV A+E  +++ I 
Sbjct: 47  IPELIARVLAGRGVGVDDALAFLDPTIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIF 106

Query: 74  GDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALARAPQLLITVD 133
           GD+D DGA +S +    L   G     Y +P+R   GYG  P  ++   A    L++TVD
Sbjct: 107 GDYDVDGAASSALTYRFLAHFGLTPEIY-IPDRIFEGYGPNPAAMQQLAANGATLIVTVD 165

Query: 134 NGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEFPSKALAGVGVIFY 193
            G +S E + AAK AG  V+V DHH  G ELP A A+VNPN+         L   GV+F 
Sbjct: 166 CGSTSHESLQAAKDAGTDVVVIDHHQVGTELPPAVALVNPNREDDLSGQGHLCAAGVVFL 225

Query: 194 VLMA-LRARLRSLGWYASTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAG 252
           V++A LR         A T   ++  LLD+VAL +V DVVPL   NR  V +GL   R  
Sbjct: 226 VMVATLRLLKDRRNRQAFT--LDLLSLLDIVALATVCDVVPLKGLNRAYVVKGLIAAR-H 282

Query: 253 RARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGIECLLTDDPALAREM 312
               G+ A+ + A      +T    GF++GPR+NA GR+ D +LG   L  DD   A  +
Sbjct: 283 MNNAGLAALFKKAGL-GGPVTPYHFGFLIGPRINAGGRIGDAALGSRLLTIDDTTEAEVI 341

Query: 313 AAQLDGMNQDRKSIEQGMQREALAQ-LKDLPVESMPFGLCLFDPQWHQGVIGILASRMKE 371
           A +LD +N++R+++E  M  EA A+ L +    S    +      WH G++G+LASR+K+
Sbjct: 342 AEKLDELNRERQAMEAAMLAEAEAEALYEYGDGSGAGVIVTARENWHPGIVGLLASRLKD 401

Query: 372 RYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLISKYGGHAMAAGLTLPE 431
           R+ RP  A A    G   GSGRS+ GF +     V AA    L+ K GGHAMAAGLT+  
Sbjct: 402 RFRRPAFAIAFDPSGKGTGSGRSINGFDM--GRMVRAAVETGLLVKGGGHAMAAGLTVER 459

Query: 432 ANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPM 491
           AN       F+    + + E   +  L  DG +      L+L   L  AGP+G    +P+
Sbjct: 460 ANLGKLRTFFEEAAAKTVNELVESSVLKIDGAIGASGATLQLVDQLEQAGPYGSGHSQPI 519

Query: 492 FH-GVFQLVEQRVVGERHLKVILKSECGSVKLDGIAFGIDR----EIWPNPTVRWVELAY 546
           F     +L + R+VG  H+K+ L++  GS +LDGIAF        ++  N   R + +A 
Sbjct: 520 FAVPAHRLRDVRLVGTAHVKITLEAMDGS-RLDGIAFRAAEAPLGQMLLNARGRNIHVAG 578

Query: 547 KLDLNEFRGQETVQLMI 563
            +  + ++GQ  VQL +
Sbjct: 579 TVGADLWQGQRRVQLRV 595