Pairwise Alignments

Query, 949 a.a., tail tape measure protein from Pseudomonas fluorescens FW300-N2E3

Subject, 1089 a.a., putative Pyocin R2_PP, tail length determination protein from Pseudomonas putida KT2440

 Score =  843 bits (2178), Expect = 0.0
 Identities = 479/956 (50%), Positives = 621/956 (64%), Gaps = 78/956 (8%)

Query: 1   MANKLALGLVIGGAVSSTVGAAFKDVTGRIKRLEDEGKKARVLQRAIGDTIRLRDEWKKA 60
           MA K+AL LVIGGAV+S++GAAFK     I++LE +G KA+VL+  IG+TI+LR+EWK+A
Sbjct: 1   MAGKVALSLVIGGAVASSLGAAFKTAENGIQKLEAKGNKAKVLKSTIGETIKLREEWKRA 60

Query: 61  HDSGSAGASKLLGRLNSNLDSLKRQGVEVGRLEKAYRSMGQAANKAEFKAKGHQQLDAGK 120
           HDSG+AGA KLL +L+SNLDSL++QG+EVG+L + Y+ +G+ A  A+ + KGHQQL AGK
Sbjct: 61  HDSGAAGADKLLRKLDSNLDSLRKQGIEVGKLGREYQRLGREARAADLQLKGHQQLQAGK 120

Query: 121 AGMKSAVGAAVVGVGALVVPTKVSADFGAIVRDIAIKAGVANKPQEQEMSRKIIDTSRDT 180
             +KS +G AVV  GA  VPT +SA++ AI+RDIAIKA +ANKP+EQ+++R +I T++DT
Sbjct: 121 ESLKSNIGRAVVATGAAAVPTMISANYQAIIRDIAIKADIANKPEEQQLTRTVIGTAKDT 180

Query: 181 GMARNDVADVVNQLVGAGMELSKALEYAPVAAKFVVGQGSSGVDTAKMINALGQNAKITD 240
           GM+RNDVAD+VNQLVGAGM+L KAL YAPVAAKF VGQG+SGVDTA MI AL QNAKI+D
Sbjct: 181 GMSRNDVADLVNQLVGAGMDLDKALSYAPVAAKFAVGQGASGVDTASMIQALEQNAKISD 240

Query: 241 AKQMQQALEAIAYQGQAGSFEAADMAKWFPELLANMGSIGITGMDAVTQLGAMLQVQMKT 300
            K MQQALEAIAYQGQAGSFEA+DMAKWFP+LLA M   GITG+DAVT LG+MLQVQMKT
Sbjct: 241 PKVMQQALEAIAYQGQAGSFEASDMAKWFPQLLAGMEKNGITGLDAVTSLGSMLQVQMKT 300

Query: 301 AGSSDEAANNLKNWMGKIGATDTVQAYKKAGIDYKGSMQTGLQNGMSTLETSMALAQKYI 360
           AGSSDEAANN KNWM KIGA D  +AY   GIDY+ S+ TGLQ GM+ +E SMALA +Y+
Sbjct: 301 AGSSDEAANNFKNWMEKIGAGDIKKAYSDVGIDYQASLNTGLQKGMNVIEASMALAMRYV 360

Query: 361 QATDPKRAAAMAEATSKISKEADPEKAKAMMASLEESLKTGDLFADMQVKAALSAYMQNK 420
           + TDP +A  + +A +KI KE DPEKAKA + +LE++L+TGD+FADMQVKAAL+AY QN+
Sbjct: 361 EKTDPAKAKQIKDAQAKIDKEVDPEKAKAALEALEKTLRTGDIFADMQVKAALTAYGQNR 420

Query: 421 ALYSQLKNDSRAATGILDKNLSERRESSSQKWAEMAQSMDDAMRSVGDALRPVTDTVAET 480
            LY +LK DS+ A+GILDKNL+ERRE+S+Q+WAE+ Q++DD+MRS+GDA+RP TD  A+ 
Sbjct: 421 GLYEELKADSKKASGILDKNLAERRETSAQQWAELGQAVDDSMRSIGDAIRPATDMAAQG 480

Query: 481 LTKVTKSITALSDSSPGVVTGIVAVGGGLITLKGLFSSFKMGKGLFNLARGSLGGGKAGE 540
           LTKV   IT+LSD  P +  GI  +   +I      S+ ++G+G+FN+A G    G AG 
Sbjct: 481 LTKVAHGITSLSDQFPSIAMGIGGITAAVIAFLSARSALRVGRGVFNIAMGRGLEGFAGR 540

Query: 541 VQKVFVTNAKDGDGKDAEPKGKAGKA-LSLVETGLKAVAALKGKPADGDAEAEGEDDKKA 599
                               GKA +A + L +TG K                        
Sbjct: 541 A-------------------GKAERAPIKLPKTGSK------------------------ 557

Query: 600 GKFDLVSTGLKVVSLAKEATS-GGGEDGEAGSGDDGVKKVFVVNAGAMGS-----AAEGP 653
               +V TGL ++     A S G  +  + G+  +  ++VFVVNA A+G      A  GP
Sbjct: 558 ----VVDTGLGLLGKVFSAGSKGAAQADDPGAAANDTQRVFVVNADAIGGIGSSVANSGP 613

Query: 654 GETCRRGRGARRNPSRRRSRPPVPRPPVPVPRP------PIPPVPVPSGAMAR---LGGV 704
               RR R   R  + R+  P  P P V  P+P       + P+P    A+     LG V
Sbjct: 614 ARGSRRSRRRERRRAARQGAPVRPAPAVEAPKPAKAAVAKVRPLPAALSALTAADDLGKV 673

Query: 705 VQAVGKIGKAAKMIPGGSLMDAGAMAFETYQTAKTQDEKAEGYGAAAGNLAGTMAGAAAG 764
            ++V  + + AK +PGG+++DAGA A +    A+T+DEKAEGYG AAG+LAGT+AGAAAG
Sbjct: 674 ARSVRGVSRLAKNLPGGNIIDAGAAAIDVALNAETKDEKAEGYGGAAGSLAGTLAGAAAG 733

Query: 765 AAIGSVVPIIGTAIGGLVGAYLGSQGGEALGGSLGKSLFGGK--DD--KPEEKPA----- 815
           AAIGSVVP+IGTA+GG VGA LG  GGE+ GG LGK  FG +  DD  +PE  PA     
Sbjct: 734 AAIGSVVPVIGTAVGGAVGAVLGGMGGESFGGWLGKRWFGDEPADDQAEPESPPALGKAL 793

Query: 816 ----APITPLLMAPRPGPAVPSLAALTQPLNGANGSGALLMAQATAPQGPVLGDVARSLA 871
                P   +   P   P     A    P + A+    +L A A         D+ R  A
Sbjct: 794 RVTVMPAKEVEPEPATAPVKADPAVSYDPRDPASKDPVVLPALAADKVRFPGADLVRPPA 853

Query: 872 -VQAPAKPAAVVIQPKEPEKPVPAKVDQQFQYSLSMPVTVQGDVKDPQRLAQDLMP 926
             ++PA PAA   QP EP  P      ++      +   V  D +DP      L+P
Sbjct: 854 SPESPADPAAPEAQP-EPSVPKLGDTVREVASPAPVEPAVSYDPRDPASKDPFLLP 908



 Score = 75.5 bits (184), Expect = 2e-17
 Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 27/167 (16%)

Query: 809  KPEEKPAAPITPLL------MAPRPGPAVPSLA------ALTQPL-------NGANGSGA 849
            +P+ +P  P TP L       AP P PA P ++      A   P        N     GA
Sbjct: 924  RPQAEPEPP-TPKLGAAVREAAPAPVPAKPVVSYDPRDPASKDPFLLPAMTANKVRFPGA 982

Query: 850  LLMAQATAPQGP-VLGDVARSLAVQAPAKPAAVVIQPKEPEKPVPA-KVDQQFQYSLSMP 907
             L+     P+ P VLGDV R +A  AP+ P    + P     P PA KVD  F ++  MP
Sbjct: 983  DLVRPQPQPEPPAVLGDVVREMAKAAPSAPKLPEVPPPAKASPPPAPKVDNTFTFAPVMP 1042

Query: 908  VTVQGDVKDPQRLAQDLMPHMQRMM-----ADAAKQNAAKLYDEPHV 949
            +TV GDVKDP +L  ++   M+ +        AA+ ++A+L+D+PHV
Sbjct: 1043 LTVHGDVKDPNQLLNEMANGMRGLFDAWQREVAARTSSAQLFDQPHV 1089