Pairwise Alignments

Query, 949 a.a., tail tape measure protein from Pseudomonas fluorescens FW300-N2E3

Subject, 784 a.a., Phage tail length tape-measure protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  111 bits (277), Expect = 2e-28
 Identities = 118/504 (23%), Positives = 211/504 (41%), Gaps = 49/504 (9%)

Query: 73  GRLN-SNLDSLKRQGVEVGRLEKAYRSMGQAANKAEFKAKGHQQLDAGKAGMKSAVGAAV 131
           G LN S L +L  +  +V RL +      Q AN A  + +  +Q    +AG+        
Sbjct: 24  GSLNASTLHTLSFEQTKVTRLTQ------QLANSALRREENDKQ----RAGLLEKTQTFA 73

Query: 132 VGVGALV-VPT---KVSADFGAIVRDIAIKAGVANKPQEQEMSRKIIDTSRDTGMARNDV 187
             +G L+ V T   K+  +F   + D+A K G+ N  ++  +S  I D S D    + D+
Sbjct: 74  GQLGKLLNVETPDWKLPYEFQGNMVDMAAKGGMDNTARDA-LSLNIRDWSLDFNQDQKDL 132

Query: 188 ADVVNQLVGAGMELSKALE-YAPVAAKFVVGQGSSGVDTAKMINALGQNAKIT--DAKQM 244
                 ++  G+   + L  Y P  AK       S    A+   A      I   D +  
Sbjct: 133 QSTAATMIEGGVSALQDLSRYMPDIAKAATASRDSAQSWAQAALATRDKLNIAPDDFRFA 192

Query: 245 QQALEAIAYQGQAGSFEAADMAKWFPELLANMGSIGITGMDAVTQLGAMLQVQMKTAGSS 304
           Q  L ++A   ++G    A+  +W   + A  G  G  G + + +L A +Q+ MK A  +
Sbjct: 193 QNMLYSVA---KSGGGSVAEQTQW---INAFAGKTGAQGKEGIAELTATMQIAMKNAPDA 246

Query: 305 DEAANNLKNWMGKIGATDTVQAYKKAGIDYKGSMQTGLQNGMSTLETSMALAQKYIQATD 364
             AA N  +++    + +T   + + G+D +GS+    QNG+   E    + Q  ++  +
Sbjct: 247 GAAAANFDHFLKSAFSKETDSWFARQGVDLQGSLLEHQQNGIGVTEAMTHIVQMQLEKMN 306

Query: 365 PKRAAAMAEATSKISKEADPEKAKAMMASLEESLKTGDLFADMQVKAALSAYMQNKALYS 424
           P+    + +   +  K  D       + ++ E    G +F D Q +  L+  + N   Y 
Sbjct: 307 PQ----ILDTFRQTMKIEDLSARGDALQAMVEKFNLGAMFGDAQTRDFLAPMLANMDEYR 362

Query: 425 QLKNDSRAATG--ILDKNLSERRESSSQKWAEMAQSMDDAMRSVGDALRPVTDTVAETLT 482
           QLK  +  A G  ++D + + +  S  ++   +  S++D   +VG  L P    +A+++T
Sbjct: 363 QLKASAMQAAGQHVIDDDFAAKMTSPGEQTKALQLSLNDLWLTVGLELMPAIGELAQSIT 422

Query: 483 KVTKSITALSDSSPGVVTGIVAVGGGLITLKGLFSSFKMGKGLF---------------- 526
            + +  +A    +P +V G+  V   +    G  +  ++G  L                 
Sbjct: 423 PLVRQFSAWLRENPALVQGVAKVVSVIWLFNGALNILRLGANLIASPFIRLIDIFLKVKA 482

Query: 527 NLARGSLGGGKAGEVQKVFVTNAK 550
            LA G  GG +A  V K F   AK
Sbjct: 483 GLALG--GGSRALSVLKSFGNGAK 504



 Score = 30.4 bits (67), Expect = 5e-04
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 831 VPSLAALTQPLNGANGSGALLMAQATAPQGPVLGDV---ARSLAVQAPAK-------PAA 880
           +PS+AA    +     +G ++  QA+AP       V   A+++A   P K       P  
Sbjct: 659 MPSVAAAVPGI-----AGTMVAQQASAPLASGAKAVTTSAKTMASPQPVKTKSAATPPTP 713

Query: 881 VVIQPKEPEKP--VPAKVDQQFQYSLSMPVTVQGD----VKDPQRLAQDLMPHMQRMMAD 934
             +  K   KP  +P++     Q   S  VTVQG      KD   +       ++RM+ D
Sbjct: 714 AALPGKSGGKPYTLPSRAQSNVQVHFSPQVTVQGSGANAAKDINNVLSLSKRELERMIND 773

Query: 935 AAKQNAAKLY 944
              Q   + Y
Sbjct: 774 VMAQQRRREY 783