Pairwise Alignments

Query, 1185 a.a., host specificity protein from Pseudomonas fluorescens FW300-N2E3

Subject, 1132 a.a., tail:host specificity protein from Escherichia coli BL21

 Score =  365 bits (937), Expect = e-104
 Identities = 280/875 (32%), Positives = 425/875 (48%), Gaps = 61/875 (6%)

Query: 15  GSSKPKSPVEASDSLRSTNLAKMLIAVGEGEFDEVPTD--YSIFLDNTPIRDASGNYNFP 72
           GSSK  +P EA D+L+ST L  ++ A+ EG   E P D   S+ L++TP+ D  GN N  
Sbjct: 4   GSSKGHTPREAKDNLKSTQLLSVIDAISEGPI-EGPVDGLKSVLLNSTPVLDTEGNTNIS 62

Query: 73  NVKWDWRSGSVDQSYIPGIPAVENETSLNVELRSDSPWVRSITNTQLSAIRMRFAWPALQ 132
            V   +R+G  +Q+   G  +  +ET L  E++ D+P  R+IT+  +  +R  F   AL 
Sbjct: 63  GVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRFTFGVQALV 122

Query: 133 RQDDEGNVVGYRIDYAIDLATDGGAYQQVYPGAVDGKTTTRYERSVRV-DLPDATSGWLI 191
               +G+     +   + +  +GG   +     + GKTT++Y  SV + +LP       I
Sbjct: 123 ETTSKGDRNPSEVRLLVQIQRNGGWVTEK-DITIKGKTTSQYLASVVMGNLPPRPFN--I 179

Query: 192 RVRRLTPNQNSNKIADTMLIAGITEVIDAKLRYPNTALLYIEFDAEQF-TNIPAVTVRCR 250
           R+RR+TP+  ++++ +  L +  TE+ID K  YPNTAL+ ++ D+EQF +   +     R
Sbjct: 180 RMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGSQQVSRNYHLR 239

Query: 251 ARKWQVPSNYDPMSRTYTGTWDGTMKQAWTNNPAWITYGICTEDRFGLGKRIKSFMVDKW 310
            R  QVPSNY+P +R Y+G WDGT K A++NN AW  + + T  R+G+GKR+ +  VDKW
Sbjct: 240 GRILQVPSNYNPQTRQYSGIWDGTFKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKW 299

Query: 311 ELYRIAQYCDQLVPNGLGGTEPRFLCDMNLQGKADAWSLLRDIAGIYRGMTYWAQGQLVM 370
            LY I QYCDQ VP+G GGTEPR  C+  L  +  AW +L D     R M  W    L  
Sbjct: 300 ALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTF 359

Query: 371 QADMPRAQDFDYVFTRANVI---DG-KFSYGSASAKTRYTRALVSYDNPANNYDTDVIPF 426
             D P   D  + + R+NV+   DG  F Y  ++ K R+    V++ +P N ++T     
Sbjct: 360 VQDRP--SDKTWTYNRSNVVMPDDGAPFRYSFSALKDRHNAVEVNWIDPNNGWETATELV 417

Query: 427 ADLALQRRMGDKPTELSAIGCTRASEAQRRGKWAILSN-NQDRTVSFKAGMEGVIPLPGH 485
            D     R G   T++ A GCT   +A R G W I +   + +TV F  G EG+  +PG 
Sbjct: 418 EDTQAIARYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGD 477

Query: 486 IIPVADSLLAGREVGGRISAVAG--RVVTLDRD-TQARAGDRLIINLPG-GRAEGRTVQS 541
           +I + D   AG   GGR+ AV    R +TLDR+ T   +G  LI  + G G      VQS
Sbjct: 478 VIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTALISLVDGSGNPVSVEVQS 537

Query: 542 VNGRAVTVTVAYSEPPIAQLQ-WALDADDLAIPLYRVLRTRRTTEGDFEISALQYEPSKF 600
           V    V V V+     +A+   W L    L   L+R +  R   +G + I+A+Q+ P K 
Sbjct: 538 VTD-GVKVKVSRVPDGVAEYSVWELKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKE 596

Query: 601 AYIDTGARLEERPISVIPITVVPAPASVT--VTSSSVVSQGIAVATMTITWPAVNGAVGY 658
           A +D GA  +      +     PA   +T  VT+ S   Q +A          V+  +  
Sbjct: 597 AIVDNGAHFDGEQSGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRL 656

Query: 659 DVEWRKDSGNWIKLQRTGMTSVDVVGIYAGAYLARVRAVSAFDISSSWRAAMLTQLKGKE 718
            V     S   +   RT  T+     +  G Y   VRAV+A+               G++
Sbjct: 657 TVTADDGSERLVSTARTTETTYRFTQLALGNYRLTVRAVNAW---------------GQQ 701

Query: 719 GLPLAVSY-LNATSQLFGIGLKWGF--------PAGAEDTQRTEIWYGPS-----TSLEL 764
           G P +VS+ + A +    I L  G+         A  + T + E W+          +E 
Sbjct: 702 GDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDPTVQFEFWFSEKQIADIRQVET 761

Query: 765 ATKLADLAYPQSDYTMQELKAGATLFFWARLVDRTGNIGPWYPVGTGVMGQASSDAGPIL 824
           +T+    A      ++  +K G   +F+ R V+  G            +G+AS DA   L
Sbjct: 762 STRYLGTALYWIAASI-NIKPGHDYYFYIRSVNTVGK-----SAFVEAVGRASDDAEGYL 815

Query: 825 DMLAGKISKTELGEDLLGEIEKIPGLQDQLDALDE 859
           D   GKI+++ LG++LL   EK+   +D    L+E
Sbjct: 816 DFFKGKITESHLGKELL---EKVELTEDNASRLEE 847



 Score = 58.9 bits (141), Expect = 2e-12
 Identities = 34/129 (26%), Positives = 58/129 (44%)

Query: 1025 NTAAVQQTSSALADTNGKLATLWSVKMETTAGGQKYAASFGLGLQVDPSGVSSQFVVRAD 1084
            N + +++ S    D + K   +W+VK+E T  G+ Y A  GL ++    G  SQF+V A+
Sbjct: 841  NASRLEEFSKEWKDASDKWNAMWAVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAAN 900

Query: 1085 TFMLLNLANGTPVSPFAVTDGQTFIRDAFIQDGTITNAKIGSYISSTNYIPGQQGWILNK 1144
                ++ ANG     F     Q F+ D F++  T      G    + +  P  +    N 
Sbjct: 901  RIAFIDPANGNETPMFVAQGNQIFMNDVFLKRLTAPTITSGGNPPAFSLTPDGKLTAKNA 960

Query: 1145 DGTFEINGS 1153
            D +  +N +
Sbjct: 961  DISGSVNAN 969