Pairwise Alignments

Query, 1025 a.a., DNA polymerase from Pseudomonas fluorescens FW300-N2E3

Subject, 1035 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1050 bits (2714), Expect = 0.0
 Identities = 557/1032 (53%), Positives = 702/1032 (68%), Gaps = 16/1032 (1%)

Query: 5    YAELHCLSNFSFQRGASSALELFERAKRQGYQALAITDECTLAGIVRAWQAAKALELPLI 64
            Y EL CLSNFSF RGAS   EL ERA   GYQALA+ DEC+LAG+VRA  AAK     L+
Sbjct: 9    YVELRCLSNFSFLRGASHPEELVERAAALGYQALALVDECSLAGVVRAHVAAKKHRFQLL 68

Query: 65   IGSEMRIE-NGP-KLVLLVENLEGYQALCRLITHARRRTEKGQYRVLREDFNGP-LPGLL 121
            IGS+ ++  + P  LV+L  NL GY  LC  IT  RR   KG YR+   D +   L   +
Sbjct: 69   IGSQFQVRCDAPFTLVVLACNLNGYGNLCEFITRLRRSAPKGSYRLAIGDIDAQALADCV 128

Query: 122  ALWVPDA---VDALEHGA-WLKGIFGERLWLAVELHYGQNDARRLADWQALATRLQIPVV 177
             + VPD     D ++  A WL   F  R WL VE     +D  RL   +  +    +P+V
Sbjct: 129  VIAVPDRHSDQDPMDTVARWLLQHFRGRCWLGVEQLCRFDDEMRLHRLRQSSELTAVPLV 188

Query: 178  ASGDVHMHARGRRALQDTMTAIRLHVRVADAGQRLHPNGERHLRSLEALRELYPASLLEE 237
            A GDV MH R R+ L D +TA R+   + + G  L P+ E+ LR    L +LYPA LL E
Sbjct: 189  AVGDVRMHVRSRKPLHDVLTATRIGKPLTECGFVLEPSAEQRLRGRLTLGQLYPADLLAE 248

Query: 238  TLIIARRCTFDLGQLRYQYPRELVPEGQTPTSWLRRLTEQGLSRRWPEGPDSTVMALIEK 297
            TL +A RC F L +LRYQYP E++PEG+TP S LR+LTE G  RRWP+G        IE 
Sbjct: 249  TLAVAARCDFSLDELRYQYPSEVIPEGETPQSHLRQLTEAGARRRWPQGTPEAFAQQIEH 308

Query: 298  ELKLIAELGYESYFLTVEDIVSFARSQRILCQGRGSAANSAVCYALGITEIDPSRTSMLF 357
            EL+LIA   YE YFLTV DIV+FARS+ ILCQGRGSAANS VCY LGITE+DP RT +LF
Sbjct: 309  ELELIAYKQYEHYFLTVHDIVAFARSKDILCQGRGSAANSVVCYCLGITEVDPGRTGLLF 368

Query: 358  ERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSTYHGAGAIRDVAKA 417
            ERF+S+ER+EPPDIDVDFEHERREEV+QY++ +YGR RAALTA V +Y    A+RDV KA
Sbjct: 369  ERFISRERDEPPDIDVDFEHERREEVIQYLYGKYGRERAALTATVISYRPRSALRDVGKA 428

Query: 418  LGLPPDQVNALADCCGHWSDDVPPLERLREGGFDPDSPVLRQVLSLTRQLIGFPRHLSQH 477
            LG     ++ LA     W       ERL+E G D     +RQ+L LT  L+GFPRHLSQH
Sbjct: 429  LGFAEGSLDVLARQSRWWDGHAIAPERLQEAGLDTGDLKVRQLLELTSTLMGFPRHLSQH 488

Query: 478  PGGFVISEQPLDSLVPVENAAMAERTIIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDL 537
             GGFV+++ PL  LVP+ENA M +RT+I+WDKDDLD VGLLKVD+LALGML+A+R+   L
Sbjct: 489  TGGFVLTQLPLSRLVPIENATMKDRTVIEWDKDDLDAVGLLKVDVLALGMLTALRKAMAL 548

Query: 538  LRDHRGRDLSLANIPSEDPQTYEMISRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEV 597
            + + +GR   + +IP  D  TY+M+  ADT+GVFQIESRAQMSMLPRL+P+++YDLVIEV
Sbjct: 549  IGEKQGRAFGMQDIPDGDDPTYDMVCAADTVGVFQIESRAQMSMLPRLRPRSYYDLVIEV 608

Query: 598  AIVRPGPIQGGMVHPYLRRRNKEEPETYPSVQ----LEAVLKRTLGVPLFQEQVMQIAIV 653
            A+VRPGPIQGG VHPYL RR  + P ++P       L+A L RT+GVP+FQEQ MQIA++
Sbjct: 609  ALVRPGPIQGGAVHPYLNRRQGKVPVSFPGPHGGRALKAALGRTMGVPIFQEQCMQIAVL 668

Query: 654  AADYSPGEADQLRRCMAAWKRHGGLEPHQKRLREGMLKNGYSEEFAAQIFEQIKGFGSYG 713
            +A ++PGEAD+LRR MAAWKRHG ++ +++RL +GM   GY  EFA  IFEQIKGF SYG
Sbjct: 669  SAGFTPGEADELRRAMAAWKRHGNVQKYEERLVKGMTDRGYELEFAQSIFEQIKGFSSYG 728

Query: 714  FPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHHLQIRPVD 773
            FPESHAASFALL Y S W+KCH PA F  AL+NS P+GFY+P Q++QDA+RH + +RPVD
Sbjct: 729  FPESHAASFALLVYVSAWIKCHHPAEFLTALLNSQPLGFYTPSQLVQDAKRHGVVVRPVD 788

Query: 774  VAASDWDCSLEPIDGEQPAIRLGLRMIKGFREDDARRIEAARLQGEFIDIADLGERARLD 833
            V  SD D +++  DG   A+RLG+R++ G  +D   RI  AR Q  F +  DL  RA LD
Sbjct: 789  VLHSDRDSTID-ADG---AVRLGMRLVSGIGQDATERIVQARAQQAFRNAQDLARRAGLD 844

Query: 834  VRAQEQLADAGALRRLAGDRHRARWEVAGVQKQLGLFAGLPSQEEPCVVLPKPTVSEDLQ 893
                + LA A AL  L+G R +  W+ A ++    L  G P  E P + LP     E + 
Sbjct: 845  QPQMKALAAADALMGLSGHRRQQVWDAAALRSPPALLKGAPVDEAP-LALPAAPEGEAVV 903

Query: 894  ADYSSVGTTLGPHPLALLRDELRARRCRSSRELLEVEHGRNVSVAGLVTGRQRPGTASGV 953
             DY+S G TL  HPLALLR+EL  RR  ++ +L +   GR V   G+VT RQ+PGT+SGV
Sbjct: 904  WDYASTGLTLRRHPLALLREELAKRRLMTAAQLQDAPDGRLVRHCGIVTLRQQPGTSSGV 963

Query: 954  TFVTLEDEFGNINVVVWRDLAERQRKALIGSQLLKIDGRWEKVGEVRHLIAGRLSDLSPL 1013
             FV+LEDE G + V+VW+ + ERQR  L G++LL + GRW++ GEVR+LIAG L DL+PL
Sbjct: 964  VFVSLEDETGVVQVIVWQRIRERQRAVLTGARLLAVYGRWQREGEVRNLIAGHLEDLTPL 1023

Query: 1014 LNGISVHSRDFH 1025
            LNG+S  SRDFH
Sbjct: 1024 LNGLSTVSRDFH 1035