Pairwise Alignments

Query, 1025 a.a., DNA polymerase from Pseudomonas fluorescens FW300-N2E3

Subject, 1160 a.a., DNA polymerase III alpha subunit from Escherichia coli BL21

 Score =  375 bits (963), Expect = e-107
 Identities = 309/1068 (28%), Positives = 509/1068 (47%), Gaps = 100/1068 (9%)

Query: 5    YAELHCLSNFSFQRGASSALELFERAKRQGYQALAITDECTLAGIVRAWQAAKALELPLI 64
            +  L   S++S   G +    L ++A   G  ALAITD   L G+V+ + A     +  I
Sbjct: 6    FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65

Query: 65   IGSEMRIENG------PKLVLLVENLEGYQALCRLITHARRRTEKGQYRVLREDFNGPL- 117
            +G++  ++          L +L  N  GYQ L  LI+ A +R       ++  D+   L 
Sbjct: 66   VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125

Query: 118  PGLLALW---VPDAVDALEHG---------AWLKGIFGERLWLAVELHYGQNDARRLADW 165
             GL+ L    + D   +L  G         A+ +  F +R +L +      ++   L   
Sbjct: 126  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185

Query: 166  QALATRLQIPVVASGDVHMHARGRRALQDTMTAIRLHVRVADAGQRLHPNGERHLRSLEA 225
              LA    +PVVA+ DV           +   AI     + D  +  + + ++++RS E 
Sbjct: 186  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245

Query: 226  LRELYP--ASLLEETLIIARRCTFDLGQLRYQYPRELVPEGQTPTS-WLRRLTEQGLSRR 282
            + EL+      L  T+ IA+RC   +    Y  P+   P G   T  +L +  ++GL  R
Sbjct: 246  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQ--FPTGDMSTEDYLVKRAKEGLEER 303

Query: 283  ----WPEGPDSTVMA-----LIEKELKLIAELGYESYFLTVEDIVSFARSQRI-LCQGRG 332
                +P+  +           +E EL++I ++G+  YFL V + + +++   + +  GRG
Sbjct: 304  LAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 363

Query: 333  SAANSAVCYALGITEIDPSRTSMLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYG 392
            S A S V YAL IT++DP    +LFERFL+ ER   PD DVDF  E+R++V+++V   YG
Sbjct: 364  SGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYG 423

Query: 393  RTRAALTAVVSTYHGAGAIRDVAKALG------------LPPDQVNALADCCGHWSDDVP 440
            R   +      T      IRDV + LG            +PPD    LA       +  P
Sbjct: 424  RDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKA----FEAEP 479

Query: 441  PLERLREGGFDPDSPVLRQVLSLTRQLIGFPRHLSQHPGGFVISEQPLDSLVPVENAAMA 500
             L  + E   +     ++ ++ + R+L G  R+  +H GG VI+   +    P+      
Sbjct: 480  QLPEIYEADEE-----VKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534

Query: 501  ERTIIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDLLRDHRGRD----LSLANIPSEDP 556
            +  + Q+DK D++  GL+K D L L  L+ I    +++   R ++    L +A IP +D 
Sbjct: 535  KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594

Query: 557  QTYEMISRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPYLRR 616
            ++++M+ R++T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R
Sbjct: 595  KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654

Query: 617  RNKEEPETYPSVQ-----LEAVLKRTLGVPLFQEQVMQIAIVAADYSPGEADQLRRCMAA 671
            ++  E  +YP VQ     L+ VL+ T G+ L+QEQVMQIA V + Y+ G AD LRR M  
Sbjct: 655  KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714

Query: 672  WKRHGGLEPHQKRLREGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCW 731
             K+   +   +    EG  KNG + E A +IF+ ++ F  YGF +SH+A++AL++Y + W
Sbjct: 715  -KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773

Query: 732  LKCHEPAAFACALINSWPMGFYSPDQILQDARRHHLQIRPVDVAASDWDCSLEPIDGEQP 791
            LK H PA F  A++ +          ++ +  R  L+I P D+ +  +   +   DGE  
Sbjct: 774  LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-DGE-- 830

Query: 792  AIRLGLRMIKGFREDDARRIEAARLQG----EFIDIADLGERARLDVRAQEQLADAGALR 847
             I  G+  IKG  E     I  AR +G    E  D+    +  +L+ R  E+L  +GA  
Sbjct: 831  -IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query: 848  RL----------------AGDRHRARWEVAGVQKQLGLFAGLPSQEE----PCVVLPKPT 887
            RL                A D+H A+ E  G     G+ A  P Q E     C   P+  
Sbjct: 890  RLGPHRAALMNSLGDALKAADQH-AKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQV 948

Query: 888  VSEDLQADYSSVGTTLGPHPL-ALLRDELRARRCRSSRELLEVEHGRNVSVAGLVTGRQR 946
            V   L  +  ++G  L  HP+   L++  R       +++   E G+ ++ AGLV   + 
Sbjct: 949  V---LDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARV 1005

Query: 947  PGTASG--VTFVTLEDEFGNINVVVWRDLAERQRKALIGSQLLKIDGR 992
              T  G  +   TL+D  G + V+++ D  ++ ++ L   ++L + G+
Sbjct: 1006 MVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053