Pairwise Alignments

Query, 185 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2E3

Subject, 379 a.a., lipoprotein required for capsular polysaccharide translocation through the outer membrane (NCBI) from Escherichia coli BW25113

 Score = 80.1 bits (196), Expect = 4e-20
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 17/186 (9%)

Query: 13  VVWPSITSADEKAA-AYLLSPGDVISISVWGEEKLKQEVH-----------VLPDGSITF 60
           V  P++T   E A   Y + PGDV++++VW   +L                V PDG++ +
Sbjct: 69  VARPNMTLESEIANYQYRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFY 128

Query: 61  PLAGQVDVAGLDATAVAKKVAARLKEFIPDPNVSVVITSTAGNLVYVQGKVLKPGTVQMS 120
           P  G+V V G     +   +  RL  +I DP V V I +      Y+ G+V K G   ++
Sbjct: 129 PYIGKVHVVGKTLAEIRSDITGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAIT 188

Query: 121 G-PTAVLQVLSMSGGLDKFADKAGIKVVRRNGAKQEILPVHYSDLMSGDDMSTNIQLQAG 179
             P  +L  ++ +GGL   AD   + V+  NG ++ I       LM   D++ N  L  G
Sbjct: 189 NVPLTILDAINAAGGLTDTADWRNV-VLTHNGREERI---SLQALMQNGDLNQNRLLYPG 244

Query: 180 DTLVVP 185
           D L VP
Sbjct: 245 DILYVP 250