Pairwise Alignments

Query, 1096 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  414 bits (1063), Expect = e-119
 Identities = 298/907 (32%), Positives = 466/907 (51%), Gaps = 61/907 (6%)

Query: 222  KLVKATKAKGELVSMEVQFRASNG-QVHDGILSAQKVELEGQPYLLSTFLDTSERKLAEQ 280
            +L+ A   +  L+ +EV+     G ++H  +++   ++      ++ +  D + RK  E 
Sbjct: 381  QLIDALIEQRPLLELEVRLPTPQGTELHLWLMARLPLQRRDYQAVILSISDITSRKQVEL 440

Query: 281  ALKDSQERLDLALDSAQLGTWDWHIPSG-MLYGSARAAQLHGLDPIPFHEPFDAFFEGV- 338
            +L + +      + +     +   +PS  M++ +    Q  G D     +  D F+E + 
Sbjct: 441  SLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDRTELAQMGDRFWELLL 500

Query: 339  -PDDERDSMRDAYRSLREGPAGNY-------QLTYRVQLPDGSSRYLESRAR-LYRDESG 389
             P+D        Y++LR     N        QL +R +  DGS R  + R + L R+  G
Sbjct: 501  HPEDAAH-----YQALRRQQRDNCHDQPLHCQLRFRHR--DGSWRCYDIREQVLTRNAEG 553

Query: 390  VPLRMAGTLLDITDQVEREQRLITSEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQI 449
            +  R+ G   D+T Q+E  Q L  SE+++  L +   D I  T     +   ++P+   +
Sbjct: 554  LVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQL-KLNYVSPSVQSV 612

Query: 450  FGWTTT--------DVIDRSADEIGLWDASVKRQQ------RIEQVIREQALNNVAIIVH 495
             G+            ++   A   G++    +  +      ++ Q+  +           
Sbjct: 613  LGYQADWIFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCL 672

Query: 496  HKDGQPLTCVISSRQISVGNEPC----IVTTLRDITQQQRSEAALKASEEKFAKAFHSSP 551
              DG+ +   I  R + V ++      ++   RDI+QQ+R+E  L+ +    A  F  S 
Sbjct: 673  RADGRKIP--IELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMA----ATVFEHST 726

Query: 552  DAITITERDSGRYLEVNDGFCRLTGYSADEVVGKTVYQIGIWAEEKQRSTLLAALKAKGR 611
             AI IT+  +G  ++ N+ F R++GY+  EV+ +    + +  +E+Q   L   +K   +
Sbjct: 727  SAILITD-PAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTV--DEQQEGHLRYVVK---Q 780

Query: 612  VHHQ-----EMLGRNKRGEILTVEVSIEPITLNE--TACLLMTARDVSLLKNAEAQIRHL 664
            +H +     E+  + + G+     V I  +  +E   A  +    D+S  K +E +I  L
Sbjct: 781  LHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRL 840

Query: 665  AYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLK 724
            AY+D LT+LPNR L  DRL   +   +R      L+FLDLD FK INDSLGH  GD +LK
Sbjct: 841  AYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLK 900

Query: 725  IITARLEASVRMEDTVARLGGDEFVVLLSGLEGTRNEVSEQVRELADTLRELLSEPMFLD 784
             +  RL A V  +DTVAR+GGDEF +LL     TR     +   +A+ +   L  P  L+
Sbjct: 901  DMALRLLACVDDDDTVARMGGDEFTLLLQP-RPTREMALNRAIHVAENILGSLVRPFVLE 959

Query: 785  GQRLQVTPSIGVALIPDHGSTPTDLLKRADIALYRAKDSGRNATQMFHNTMQKAASERLR 844
             +   VT SIG+AL P  GS  + L+K AD A+Y AK+ G+N  Q +   M  +A ERL 
Sbjct: 960  NREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLE 1019

Query: 845  METDLRLALSRGEFSVQYQPQVDALDGRIIGAEALVRWRHPRLGEQSPSEFIKVLEDSGL 904
            +E+DLR A+ + EF + YQPQ      R+ GAEAL+RWRHP  G   P +FI V+E+ GL
Sbjct: 1020 LESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGL 1079

Query: 905  ILEVGAWILDETCQAFRQLIDRGLIDPLNFSLCVNISPRQFRQNDFVERIEQTLSSHGLP 964
            +++VG W+L E  +  +      +  P    + VNIS RQF       RI   L   GLP
Sbjct: 1080 VVDVGDWVLREASRQLKAWHKAKVRVP---KVSVNISARQFSDGQLGTRIANILEESGLP 1136

Query: 965  YSLLKLEVTEGIVIQNLDDTISKMRRLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKID 1024
             + L+LE+TE I+++ +++ +  +  LK LG+S A+DDFGTGYSSL YLK+ P+D LKID
Sbjct: 1137 PACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKID 1196

Query: 1025 QSFIRDATSDPNDAEIIRAIVAMARSLELTVIAEGVETTEQLDFLQGLGCHLYQGYLHSQ 1084
            ++F+        DA+I RAI+AMA SL L VIAEGVET EQL+FL+  GC   QGYL  +
Sbjct: 1197 RTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGR 1256

Query: 1085 PLPLEGF 1091
            P+P   F
Sbjct: 1257 PMPAHQF 1263



 Score = 38.5 bits (88), Expect = 3e-06
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 133 DKQGRPRMIGVIREITHQRQREQALSSSEKRFATLFHLCPNMVLLTRQEDGLISEANQYF 192
           D Q    ++GV R+I+ QR+ E+ L    +  AT+F    + +L+T    G I +AN+ F
Sbjct: 691 DDQRFEGVLGVGRDISQQRRAEKDL----RMAATVFEHSTSAILIT-DPAGYIVQANEAF 745

Query: 193 ESLFGWPVHSVIGRTTLELGLWVNPEQRAKL---VKATKAKGELVSMEVQFRASNGQVHD 249
             + G+ V  V+ +  L   L V+ +Q   L   VK    +G     EV  +  +G  + 
Sbjct: 746 SRVSGYAVSEVLDQ--LPGMLTVDEQQEGHLRYVVKQLHQRGSWEG-EVWLKRRDGDHYP 802

Query: 250 ---GILSAQKVELEGQPYLLSTFLDTSERKLAEQAL 282
              GI +    E +   Y +  F D SERK +EQ +
Sbjct: 803 AWVGITAVLDDEGDLASY-VCFFTDISERKASEQRI 837



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 107 EQAMHHRIRWP--DGSLHWLEINGSLIP-DKQGR-PRMIGVIREITHQRQREQALSSSEK 162
           +Q +H ++R+   DGS    +I   ++  + +G   R+IGV +++T Q +  Q+L  SE+
Sbjct: 521 DQPLHCQLRFRHRDGSWRCYDIREQVLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQ 580

Query: 163 RFATLFHLCPNMVLLT 178
           R+  L     +++  T
Sbjct: 581 RYRMLAESISDVIFST 596



 Score = 28.9 bits (63), Expect = 0.003
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 461 SADEIGLWDASVKRQQRIEQVIREQALNNVAIIVHHKDGQPLTCVISSR-QISVGNEPCI 519
           S D +G+        Q I+ +I ++ L  + + +    G  L   + +R  +   +   +
Sbjct: 374 SRDSVGM--------QLIDALIEQRPLLELEVRLPTPQGTELHLWLMARLPLQRRDYQAV 425

Query: 520 VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITERDSGRYLEVNDGFCRLTGYSA 579
           + ++ DIT +++ E +L   E  ++    + PD + + +  S R +  N    +  GY  
Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485

Query: 580 DEV 582
            E+
Sbjct: 486 TEL 488