Pairwise Alignments

Query, 557 a.a., RNA helicase from Pseudomonas fluorescens FW300-N2E3

Subject, 629 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  449 bits (1156), Expect = e-130
 Identities = 264/560 (47%), Positives = 351/560 (62%), Gaps = 24/560 (4%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           FA   L   IL A+   GYE+PS IQ + IP ++ G D++G AQTG+GKTAAF+LP+L+ 
Sbjct: 8   FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
           +DP  + PQ L+LAPTRELA+QVA A   ++K M GV VVA+YGG     QL+A+R G Q
Sbjct: 68  LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127

Query: 128 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVLFS 187
           IVV TPGRL DHL+R    L+ ++ LVLDEADEML++GF++D+E I   +P   QT LFS
Sbjct: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187

Query: 188 ATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247
           AT+P++IR I  R +++PQ V+IQ+   T   I Q++  V   +K  A++  LE EDFDA
Sbjct: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247

Query: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307
            I+FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ +E LKDGRLDI++ATDVAAR
Sbjct: 248 AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367

Query: 368 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTP-------RAL 420
           + EV LP+A+ +   R++K     + +    ES+  D    L A I  +          L
Sbjct: 368 IPEVELPNAELLGKRRLEKFA---AKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETL 424

Query: 421 AAALLRKATNAQALTLAAIEKERPLVPNN--APRGDR-PERTGDRPDRGDRERRAPIPLA 477
           AAALL+ A   + L L     + P+ P      R DR P    DR  RGDRE R   P  
Sbjct: 425 AAALLKMAQGERPLIL---PPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREER---PRR 478

Query: 478 EGR-----ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGL 532
           E R        R  +G  DG+  ++++GAI NEG ++   IG I++  S S +ELP+   
Sbjct: 479 ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP 538

Query: 533 ERLLTKLKDTRVAGKQLKLR 552
             +L     TR+  K + ++
Sbjct: 539 GEVLQHFTRTRILNKPMNMQ 558