Pairwise Alignments

Query, 869 a.a., fimbrial protein from Pseudomonas fluorescens FW300-N2E3

Subject, 848 a.a., FIG100795: Fimbriae usher protein StiC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  409 bits (1051), Expect = e-118
 Identities = 289/865 (33%), Positives = 437/865 (50%), Gaps = 73/865 (8%)

Query: 12  LSKYWSCFALITSGLTTTAVYADYSFDASFLEIGGGNTSAEVAEQVKTMSQGQLPGIYRV 71
           LS+   C AL  S  T  A   DY F+ +F+E  G      V        + QLPG Y V
Sbjct: 11  LSRCAVCIAL-GSTFTHVAWARDY-FNPAFIENHGQANRTSVDLSTFDNDKSQLPGTYYV 68

Query: 72  NVTVDNRMIEQRDVRFVRETAQQ-KPTLTGLFPCLSIDQLTALGVDPARLAHADISTEQC 130
            + ++   I  R+V F   T    +  L G   CL + +L   GV        + S + C
Sbjct: 69  TININKTEIGARNVDFQLATLSDGQQALQG---CLRLQELKDNGVKTDLFPTLE-SEKGC 124

Query: 131 VYFNRDLAGVTYTYDFHKQRLDLQIPQAFV-----GSVPFATRRKRWSDGEQVAFANYSF 185
           V  +  + G +  +DF +Q L + IPQ ++     G VP     ++W +G      NYSF
Sbjct: 125 VDLSV-IPGASQRFDFQQQALSVSIPQLYIANNARGYVP----PEKWQEGITALMLNYSF 179

Query: 186 SG-SQYQT--DYNNRQSQFGSVRSGINTGAWRLRNFSNWQKSTNVEGQWKSLDTYVQRDM 242
           SG  +Y +  D ++ +S++ +++ G N G WR RN+SNW  +    G W S+  Y+QRD+
Sbjct: 180 SGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGENGSWNSVYNYLQRDI 239

Query: 243 GNMMAIATIGESSTDSDLFDSISYRGIGIESDLDMLPEESRNFAPVVRGVANGRSLVTLR 302
             + +  T G+S+T SD+FDS+ +RG+ + SD  M P   R +AP +RG+A   + V +R
Sbjct: 240 IALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVR 299

Query: 303 QRGYVISEQWVPSGPFALKDLYSTPSNGDIEVTVQGPNGERQVYTQSFSSVPYMMREGQQ 362
           Q GY+  +  V  G F + D++ T SNGD +VTV+  +G  Q +   +SS+P + R G+ 
Sbjct: 300 QNGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRA 359

Query: 363 SYSLTAGQYRPADGARDQAKPAFVLGTLRRGLSDGTTLFGGA-LVSDQYKSSLLGFAHDY 421
            YS+T G+YR  +   + A   F   TL  GL  G TL+GG+ +  D+Y+S   G   + 
Sbjct: 360 KYSVTVGKYRDYN---NHALDDFGQATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNM 416

Query: 422 AGFGAISLD--VTHAVSDDLGPERKTLAGQSYRFRYSKTLSLTDTNFSLIGYRYSTSGYY 479
              GAISLD   +HA  DD    RK + GQS+  RYSK +  T T FSL GYRY++  Y 
Sbjct: 417 QMLGAISLDGIWSHAKFDD---GRKEI-GQSWHVRYSKGVVSTGTTFSLAGYRYASENYN 472

Query: 480 SFSEANNARANRSLAPYVDESLSNGEHFSPYLQGHMKSSFTANVSQQFGN-YGGLYANLT 538
           S SE  N                + + +  Y  G   + F A+V+QQ  N  G L  +  
Sbjct: 473 SLSEVIN---------------PDDDFYDNY--GKRHNRFEASVNQQISNTLGSLTLSWV 515

Query: 539 KTAYWNMAKSNTSIQLGYSFSVGRASYNLGLAQN-------GGSDDD----------IRS 581
           K  YW+ A+   S+   Y+ S G  SY L  + N         +DDD           R 
Sbjct: 516 KEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRL 575

Query: 582 LSLSVSLPLGDPGSSSRIGLSNNQDSNGNATRAATFSGSSFKDDALSYSLGVNQQLSDED 641
            +LS+ +P     S        N   +     + T SG++ +D  L++SL  +    D D
Sbjct: 576 FTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGD 635

Query: 642 RILGGSVAARYNAANAIWHGSYNQDRNTRQMDYGVEGGVVAMRDTLMFTQPLGETNIIVA 701
               G V A Y    A  +  YNQ  +++Q+ YG+ GG++A  + +  +QP+    I++ 
Sbjct: 636 ---SGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIK 692

Query: 702 TPGAADVGVLTRSGVRTNNSGYTIISSAQPYRDNRVSLDTDSLSDNVDIAGLVQEVTPKR 761
            PGA+ V V  ++GV T+  GYT+I +  PY    +SLD+ + +DNVDI    Q V P R
Sbjct: 693 APGASGVSVENQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTR 752

Query: 762 GAFVMARFKTQNGRRLLVTVETAQGMAAPFAANVQLFDSTGAVLSEAMVADKGRVFITGV 821
            A V A + T  G R+L+T+  + G   PF A   + D   A L+ ++V DKG+VF++G+
Sbjct: 753 NAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASV-DGQDANLA-SIVGDKGQVFLSGL 810

Query: 822 PEQSRLVIKVNGKTWCRQD--LDLS 844
           PE+  L++   G   CR D  LD+S
Sbjct: 811 PEEGLLLVNW-GSASCRADYRLDIS 834