Pairwise Alignments

Query, 754 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2E3

Subject, 884 a.a., DNA gyrase subunit A from Pseudomonas simiae WCS417

 Score =  412 bits (1059), Expect = e-119
 Identities = 275/781 (35%), Positives = 429/781 (54%), Gaps = 82/781 (10%)

Query: 16  SLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKSARTVG 75
           ++ D  + +YL+Y+M VI+ RALP   DGLKPV RR+++AMSELG D +  +KKSAR VG
Sbjct: 12  NIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE R+++ 
Sbjct: 72  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKL 130

Query: 136 SEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195
           +  LL++L + T DW PN+DGT   P V+P ++PN+L+NG++GIAVGMAT++PPHNL EV
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 196 ATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYHIE 255
              C+ L+D P+ TV++L ++I GPD+PT A II  RA +++ Y TGRG + MRA   IE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPT-AAIINGRAGIIEAYRTGRGRIYMRARSIIE 249

Query: 256 DGD-------IVVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPCRIVI 308
           D D       IV+T LP+Q++ A+++E+IA +++ K  K   + +LRDESD +   R+VI
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK--KLEGITELRDESDKDG-MRVVI 306

Query: 309 IPVNSRVDHEALMQHLFASTELESSYRVNINIIGLDGKPQLKNLRALLVEWLEFRVQTVR 368
                 V  E ++ +L+A T+L+S + +N+ +  +DG+P++ NL+ LL  ++  R + V 
Sbjct: 307 ELRRGEVP-EVILNNLYAQTQLQSVFGINV-VALIDGRPRILNLKDLLEAFVRHRREVVT 364

Query: 369 RRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPK----------------AKL 412
           RR  F L K   R H+L+G  +A  N+D VI +I+    P                   +
Sbjct: 365 RRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAM 424

Query: 413 IER---------------------FALSEIQADYILDTRLRQLAKLEEMKLRGEQDELLK 451
           +ER                     + LS  QA  IL+ RL +L  LE  KL  E  E+L 
Sbjct: 425 VERAGADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484

Query: 452 EQAKLQALLGSETKLKKLVRSELIKDAETYGDDRRSPIVERAEAKALTEHDLLPNEKVTV 511
           +  +L  +L S  +L +++R EL      YGD RR+ I++      LT  D++P E+  V
Sbjct: 485 QIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILD--ARLDLTLGDMIPEEERVV 542

Query: 512 VLSEKGWVRSAK----------GHDIDATGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRS 561
            +S  G+ ++            G    ATG+  K  D         S+   +   S G+ 
Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGV--KDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 562 YSVPAHTLPSA--RGQGEPLTGRLTPPPGATFECVLMPED---DGLYVIASDAGYGFVVK 616
           Y +  + +P A    +G PL   L P     +   ++P +   +G ++  + A  G V K
Sbjct: 601 YWLKTYEIPEASRAARGRPLV-NLLPLDSDEYITTMLPVEEYTEGHFIFMATA-KGTVKK 658

Query: 617 G--EDLQAKNKAGKALLSLPNNAKVILPRPVADREQNWLASVTTEGRLLIFKISDLPQLG 674
              E    +   G   L L +   V++   + D E+  +   +  G++  FK SD+    
Sbjct: 659 TPLESFSRQRSVGLIALEL-DEGDVLISAAITDGERE-VMLFSDGGKVTRFKESDV---- 712

Query: 675 KGKGNKIIGISGERVASREEYVTDIAVLPEGATLVLQAGKRTLSLKADDLEHYKGERGRR 734
           +  G    G+ G R+   ++ ++   ++PE  + +L A +R    +    E  + +RG +
Sbjct: 713 RAMGRTARGVRGMRLPEGQKLIS--MLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQ 770

Query: 735 G 735
           G
Sbjct: 771 G 771



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 22/158 (13%)

Query: 586 PPGATFECVLMPEDDGLYVIASDAGYGFVVKGEDLQAKNKAGK---ALLSLPNNAKVILP 642
           P G     +L+PE+    + AS+ GYG      +     + G+   A++S   N +++  
Sbjct: 728 PEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGA 787

Query: 643 RPVADREQNWLASVTTEGRLLIFKISDLPQLGK----------GKGNKIIGISGERVASR 692
             V D E+  L  ++ +G L+  +++++  LG+           K  K++G+  ERV   
Sbjct: 788 VQVLDGEEIML--ISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGL--ERVQEP 843

Query: 693 EEYVTDIAVLPEGATLVLQAG-----KRTLSLKADDLE 725
            E   +     E    V+ AG     + TL   AD+ E
Sbjct: 844 SEVEGEELEGEEFEGEVIAAGDDNVDEPTLDAAADEEE 881