Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2E3

Subject, 656 a.a., Topoisomerase IV subunit B (EC 5.99.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  587 bits (1512), Expect = e-172
 Identities = 322/655 (49%), Positives = 425/655 (64%), Gaps = 24/655 (3%)

Query: 1   MATPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHATSVQ 60
           MAT + + Y+  +I VL GL+PV++RPGMYT T  P H+ QEV+DN+ DEALAGH   ++
Sbjct: 1   MATQTPNEYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVLDNAADEALAGHGKKIK 60

Query: 61  VILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKN---YQFSGGLHG 117
           V LHADHS+ V DDGRG+P  +HPEE    VEL+ T+LHAGGKF       Y FSGGLHG
Sbjct: 61  VTLHADHSVSVEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGKGGAYSFSGGLHG 120

Query: 118 VGISVVNALSTQVRVRVKRDGNEYQMTFADGYKATDLEVVGT-VGKRNTGTSVYFAPDPK 176
           VG+SV NALST++ V   R+G   ++TF+ G     L +     G R  GT+V   PD K
Sbjct: 121 VGVSVTNALSTRLEVTSFREGQVAKLTFSAGDVIEPLVLTPKGEGDRKQGTTVRAWPDAK 180

Query: 177 YFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKATGEKVEWHYEDGLRSYLVDAVSEFER 236
           YF++    +  L H+L++KAVL PG+ V+  ++ T +   W Y+ GLR YL   ++    
Sbjct: 181 YFETAALPMGELTHLLRSKAVLMPGVSVTLVNEKTRDTQTWLYKGGLRDYLQQTLTGDPV 240

Query: 237 LP---DEPFCGS---LAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQG 290
           +P    E F  S        E   W + +  E G  V+ESYVNLIPT+ GGTH +GLR G
Sbjct: 241 IPLFEGEGFADSGHDSFAEGEGAAWCVAFT-EDGQPVRESYVNLIPTSAGGTHESGLRDG 299

Query: 291 LLDAMREFCEFRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFV 350
           L  A++ F E  +LLP+GVKL PEDV+ R ++VLS K+ +PQF GQ KERL+SR+A   V
Sbjct: 300 LFQAVKGFIELHALLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLV 359

Query: 351 SGVVKDAFSLWLNANPELGLQLAELAINNAGRRLKASKKVERKRITQGPALPGKLADCAG 410
              V+ A  LWLN + + G +LAELAI  A  R KA +KVE+++ +    LPGKL DC  
Sbjct: 360 GSFVRPALELWLNQHVDYGRKLAELAIKAAQSRQKAGQKVEKRKGSGVAVLPGKLTDCES 419

Query: 411 QDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAV 470
           +D   +E+FLVEGDSAGGSAK  RDKE QA+LPLRGK+LNTWEV+   + A+ E+H+IAV
Sbjct: 420 KDLAHNEVFLVEGDSAGGSAKMGRDKESQAVLPLRGKVLNTWEVERDRLFANTEIHDIAV 479

Query: 471 AIGVDP----GAADMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVA 526
           AIGVDP       D+S LRYGK+CIL+DAD DG HI  LL  LF +HF  L++AGHVYVA
Sbjct: 480 AIGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVA 539

Query: 527 MPPLYRIDL---GKE---IYYALDEAERDGILDRLVAE-KKRGKPQVTRFKGLGEMNPPQ 579
            PPL+R+D+   GK+     YALDE E   ILD+   +     K Q++RFKGLGEM+  Q
Sbjct: 540 RPPLFRVDIPARGKKPAAKQYALDEGELHAILDKTAKDGVAPEKCQISRFKGLGEMSAEQ 599

Query: 580 LRETTMDPNTRRLVQLTLD--DFEATSEMMDMLLAKKRAGDRKSWLESKGNLAEV 632
           L +TT++P+TRRL+ + L   DF  T  ++  L+ K  A  R+  +E  G+  EV
Sbjct: 600 LWDTTLNPDTRRLMPVVLGAVDFAGTEALITKLMGKGEAASRRELMELHGDSVEV 654