Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV from Pseudomonas fluorescens FW300-N2E3

Subject, 652 a.a., DNA gyrase, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  432 bits (1112), Expect = e-125
 Identities = 248/645 (38%), Positives = 370/645 (57%), Gaps = 27/645 (4%)

Query: 9   YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHATSVQVILHA 65
           Y+A  I++L GL+ VRKRP MY         +HL  EV+DNS+DEALAGH  ++ V +  
Sbjct: 12  YSAGNIQILEGLEAVRKRPAMYIGDVGVKGLHHLIWEVVDNSIDEALAGHCDTIHVTVLE 71

Query: 66  DHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNA 125
           D+S++V D+GRG+P D+H +E  S +E+++T LHAGGKF    Y+ SGGLHGVG+S VNA
Sbjct: 72  DNSVQVEDNGRGIPTDMHEKEKRSALEVVMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNA 131

Query: 126 LSTQVRVRVKRDGNEYQMTFADGYKATDLEVVGTVGKRNTGTSVYFAPDPKYFDSPKFSI 185
           LST ++  V R+G  ++  ++ G   T +  +G   KR  GT ++F PD   F   ++  
Sbjct: 132 LSTHLKATVYRNGKVFEQEYSRGVPQTGVTEIGETEKR--GTIIHFVPDGDIFTVTEYKY 189

Query: 186 SRLKHVLKAKAVLCPGLLVSFED------KATGEKVEWHYEDGLRSYLVDAVSEFERLPD 239
             + + L+  A L  G+ + F+D      +   +  E+  E GL  ++       E++  
Sbjct: 190 ETIANRLREMAFLNAGVRIFFKDMRELDEEGNPKSDEFFSEGGLIEFVEYLDETREKIIQ 249

Query: 240 EPFCGSLAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 299
           EP       N   V  A+ +     ++V  SYVN I T +GGTHV+G R+ L   ++ + 
Sbjct: 250 EPIYIESEKNAVPVQVAMSYNSSFSENV-VSYVNTINTYEGGTHVSGFRRALTRTLKGYA 308

Query: 300 EFRSLLPR-GVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAF 358
           +   +L +    ++ +D  E +  V+S+K+ EPQF GQTK +L + E  + V   V +  
Sbjct: 309 DKSGMLDKVKFDVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVVSAVDSAVSEVL 368

Query: 359 SLWLNANPE-----LGLQLAELAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDP 413
             WL  +P+     +G  +      +A R  KA + V+RK +  G  LPGKLADCA  +P
Sbjct: 369 QYWLEEHPKEAKIIVGKVVLAAQARHAAR--KAREMVQRKNVLGGGGLPGKLADCANTNP 426

Query: 414 MRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIG 473
              EL+LVEGDSAGGSAKQ RD++FQAILPL+GKILN  +    ++  + E+ NI  A+G
Sbjct: 427 EVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEIKNILTALG 486

Query: 474 VDPGAA------DMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAM 527
           V  G A      D++ LRY KI I+ DAD DG HI TL+  LF ++ R L++ G+VY+A+
Sbjct: 487 VKFGTAEDEKELDLTNLRYHKIVIMTDADIDGSHIRTLILTLFFRYMRSLIENGYVYIAL 546

Query: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDP 587
           PPLY +  GK+  Y   E ER  +   +  + K     + R+KGLGEMNP QL  TTMDP
Sbjct: 547 PPLYLLKKGKDERYCWSEDERIKLTKEMAGDGKTDNVGIQRYKGLGEMNPEQLWTTTMDP 606

Query: 588 NTRRLVQLTLDDFEATSEMMDMLLAKKRAGDRKSWLESKGNLAEV 632
            +R L Q+T++       +  ML+  + A  R+ ++E     A++
Sbjct: 607 ESRTLKQVTIESAAEADHLFSMLMGDEVA-PRREFIEKNAKYAKI 650