Pairwise Alignments

Query, 923 a.a., DNA polymerase I from Pseudomonas fluorescens FW300-N2E3

Subject, 928 a.a., DNA polymerase I (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1042 bits (2695), Expect = 0.0
 Identities = 547/931 (58%), Positives = 679/931 (72%), Gaps = 22/931 (2%)

Query: 5   PLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAKGG 64
           PL+LVDGSSYLYRA+HA PPLT S G PTGA+ GVLNML+SL  QY  +  AVVFDAKG 
Sbjct: 8   PLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVVFDAKGK 67

Query: 65  TFRDDLYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVDGVEADDVIGTLARSSAA 124
           TFRD+L+  YK++RP MPDD+R QIEPLHA V A+G PLL V GVEADDVIGTLAR +  
Sbjct: 68  TFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEK 127

Query: 125 ADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVAGVKEKFGVAPEQIIDYLALMGDSS 184
             RPV+ISTGDKDMAQLV  +ITL+NTMT + +    V  K+GV PE IID+LALMGDSS
Sbjct: 128 VGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMGDSS 187

Query: 185 DNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEMAFLS 244
           DNIPGVPG+G KTA  LL G+ GGL  LYA+ + +  L  RGAKT+  KL ++K++A+LS
Sbjct: 188 DNIPGVPGVGEKTAQALLQGL-GGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAYLS 246

Query: 245 YQLATIKVDVPLDVGLDDLHLREPDREKLAELYTLLEFKSWFEEVQRDA--KRAGQEVVA 302
           Y+LATIK DV L++  + L +++P  ++L  L+   EFK W  +V+     +  G +  A
Sbjct: 247 YKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAKGAKPAA 306

Query: 303 AVEEAVADSDGP----------HYTTVLTQADFDVWLKKLQNATLFAFDTETTGIDAQQA 352
             +E V   + P          +Y T+L     + W++KL+ A +FAFDTET  +D   A
Sbjct: 307 KPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAA 366

Query: 353 QLVGLSFAVQANEAAYIPLTHSYMGVPDQLDRDTVLRALKPILEDPSKLKVGQHAKFDMN 412
            LVGLSFA++   AAY+P+ H Y+  PDQ+ R   L  LKP+LED    KVGQ+ K+D  
Sbjct: 367 NLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELLKPLLEDEKVRKVGQNLKYDRG 426

Query: 413 ILANCAIGGDQSCGIMVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGYTTTSFQDIAG 472
           +L        Q+ GI ++GIAFDTMLESY+L+S A RHDMDSL+ ++L + T +F+DIAG
Sbjct: 427 VL--------QNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAG 478

Query: 473 KGVKQLTFDQISLELAGPYAAEDADVTLRLHQTLHEKLDAIPSLSKVLSEIEMPLVPVLA 532
           KG  QLTF+QI+LE AG YAAEDADVTL+LH  +  +L        V   IEMPLVPVL+
Sbjct: 479 KGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLS 538

Query: 533 RIERQGALVDANLLGIQSVELGDKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPI 592
           R+ER G  +D  +L   S E+  +L  LE++A  IAGE FNL S KQL  IL+EK G+  
Sbjct: 539 RVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKP 598

Query: 593 LSKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINPRTGRIHT 652
           L KT  G  ST+E VL ELA  DYPLPKV+++YR L+KLKSTYTD+LP  INP+TGR+HT
Sbjct: 599 LKKTPGGAPSTSEEVLEELA-LDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHT 657

Query: 653 SYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHL 712
           SYHQAV ATGRLSS+DPNLQNIP+R  EGRRIRQAFIAP+ Y +++ADYSQIELRIMAHL
Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717

Query: 713 AKDEGLLHAFRNDLDVHKATAAEVFGVELADVTTDQRRSAKAINFGLIYGMSAFGLAKQI 772
           ++D+GLL AF    D+H+ATAAEVFG+ L  VT +QRRSAKAINFGLIYGMSAFGL++Q+
Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQL 777

Query: 773 GVDRKQSQAYIDRYFARYPGVLEYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRK 832
            + RK++Q Y+D YF RYPGVLEYMERTRAQA EQG+VET+ GRRLYLPDI + N A R 
Sbjct: 778 NIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRA 837

Query: 833 GAERTAINAPMQGTAADIIKKAMVAVDNWLLTSGLDAKVILQVHDELVLEVREDLIDQVR 892
           GAER AINAPMQGTAADIIK+AM+AVD WL       ++I+QVHDELV EV +D +D V 
Sbjct: 838 GAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVA 897

Query: 893 EEIRVHMSSAATLDVPLLVEVGVGNNWDEAH 923
           + I   M +   +DVPLLVEVG G NWD+AH
Sbjct: 898 KRIHQLMENCTRIDVPLLVEVGSGENWDQAH 928